Table 3.
General characteristics of R. dominica PSPs (active site residues, RNA expression and signal peptide prediction).
| Type | MEROPS | Peptidase * | R. dominica Sequence ID | Active Site Residues | RNA Expression (RPKM) | Signal Peptide (Amino Acid) | ||
|---|---|---|---|---|---|---|---|---|
| Gut | Carcass | Head | ||||||
| Serine | S9 | POP | RDOM022815 | SDH | 40.0 | 66.0 | 179 | n/a |
| DPP 4 | RDOM016604 | SDH | 29.0 | 15.0 | 6.00 | 13 | ||
| RDOM017825 | SDH | 13.0 | 10.0 | 9.00 | n/a | |||
| DPP 9 | RDOM002099 | SDH | 4.40 | 4.30 | 6.00 | n/a | ||
| DPP 10 | RDOM007500 | GDH | 0.60 | 1.30 | 1.30 | n/a | ||
| RDOM016697 | GDH | 0.04 | 11.0 | 26.0 | n/a | |||
| RDOM007053 | SDH | 0.50 | 1.00 | 1.00 | n/a | |||
| S28 | PRCP | RDOM021888 | SDH | 25.0 | 47.0 | 60.0 | 18 | |
| RDOM004644 | SDH | 56.0 | 105 | 79.0 | 18 | |||
| Metal-dependent | M24 | APP1 | RDOM014136 | DDHEE | 0.50 | 1.40 | 0.60 | n/a |
| RDOM016283 | DDHEE | 50.0 | 29.0 | 29.0 | n/a | |||
| APP3 | RDOM000819 | DDHEE | 246 | 222 | 88.0 | n/a | ||
| Prolidase | RDOM021565 | DDHEE | 182 | 74.0 | 71.0 | n/a | ||
* POP—prolyloligopeptidase, DPP—dipeptidylpeptidase, PRCP—prolylcarboxypeptidase, APP—aminopeptidase P.