Table 5.
General characteristics of R. dominica cathepsins (gene coordinates, expression and enzyme active site residues).
| Gene names | Annotation | Gene Coordinates | Expression (RPKM) | Active Site Residues | |||
|---|---|---|---|---|---|---|---|
| Adult | Gut 1 | Carcass 1 | Head 1 | ||||
| RdL_97 | Cathepsin L | Scaffold_97:41752520–41759245 + strand | 305 | 202 | 272 | 359 | QCHN |
| RdLc1_97 | Cathepsin Lc1 | Scaffold_97:41485991–41504771 − strand | 5.79 | 0 | 2.17 | 0.49 | QCHN |
| RdLc2_97 | Cathepsin Lc2 | Scaffold_97:41733271–41745109 + strand | 115 | 14.8 | 903 | 335 | QCHN |
| RdLl_3 | Cathepsin L1 | Scaffold_3:61931842–61935045 + strand | 114 | 160 | 145 | 108 | QCHN |
| RdO_135 | Cathepsin O | Scaffold_135:6970795–6971976 − strand | 12.0 | 7.41 | 8.53 | 7.30 | QCHN |
| RdF_3 | Cathepsin F | Scaffold_3:45747905–45769454 − strand | 94.8 | 57.2 | 176 | 213 | QCHN |
| RdI_5 | Cathepsin I | Scaffold_5:4129386–4130669 + strand | 9.99 | 0.21 | 0.58 | 0.31 | QCHN |
| RdB_100 | Cathepsin B | Scaffold_100:30781674–30791599 + strand | 272 | 729 | 571 | 164 | QCHN HH |
| RdTINAL-like_3 | Cathepsin B TINAL-like | Scaffold_3:13137364-13151656 − strand | 32.3 | 27.4 | 35.3 | 43.9 | QSHN |
1 Tissues were from the same group of dissected larvae.