Table 6.
Characteristics, organizational properties, and abundance of 10 major families of repeats found in the R. dominica genome.
| Repeat Name | Consensus Monomer Length (bp) | Number of Arrays in a Cluster | Total Number of Monomers | Maximum Number of Monomers in an Array | Average Number of Monomers in an Array | AT Content of Consensus Sequence (%) | Average Monomer Similarity (%) | Genome Occupancy (bp) | % of the Assembled Genome |
|---|---|---|---|---|---|---|---|---|---|
| RD rep1 | 147 | 320 | 1836.8 | 37.1 | 5.7 | 52.4 | 93.6 | 270,614 | 0.0565 |
| RD rep2 | 123 | 308 | 3765.4 | 230.0 | 12.2 | 61.0 | 78.4 | 462,627 | 0.0965 |
| RD rep3 | 126 | 266 | 3389.4 | 190.7 | 12.7 | 63.5 | 85.2 | 418,239 | 0.0873 |
| RD rep4 | 126 | 182 | 2390.3 | 173.5 | 13.1 | 65.1 | 91.1 | 298,197 | 0.0622 |
| RD rep5 | 127 | 107 | 429.3 | 11.3 | 4.0 | 55.1 | 91.9 | 54,080 | 0.0113 |
| RD rep6 | 272 | 98 | 751.1 | 58.3 | 7.6 | 61.4 | 89.0 | 203,159 | 0.0424 |
| RD rep7 | 294 | 97 | 1350.2 | 59.7 | 13.9 | 59.5 | 86.6 | 397,984 | 0.0831 |
| RD rep8 | 110 | 97 | 260.2 | 7.0 | 2.7 | 63.6 | 96.4 | 28,933 | 0.0060 |
| RD rep9 | 135 | 95 | 734.4 | 23.7 | 7.7 | 65.2 | 89.4 | 95,988 | 0.0200 |
| RD rep10 | 153 | 89 | 898.4 | 31.7 | 10.1 | 54.9 | 93.6 | 137,075 | 0.0286 |