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. 2022 Mar 18;20:1413–1426. doi: 10.1016/j.csbj.2022.03.014

Table 1.

Nextcast components currently utilised and reviewed in the literature.

Tool Used in Cited in Category
eUTOPIA [14] Bioinformatics
https://github.com/Greco-Lab/eUTOPIA [24], [25], [5], [26], [27], [28], [29], [30] [31], [2], [3] Analytics
R, Shiny Preprocessing
INfORM [16] Bioinformatics
https://github.com/Greco-Lab/INfORM [32], [33], [28], [26], [34] [31], [2], [3], [4], [35] Analytics
R, Shiny Network Analysis
VOLTA [36] Bioinformatics
https://github.com/fhaive/VOLTA - - Analytics
Python Network Analysis
BMDx [10] Bioinformatics
https://github.com/Greco-Lab/BMDx Analytics
R, Shiny - [4] Dose-Responsive
TinderMIX [12] Bioinformatics
https://github.com/grecolab/TinderMIX Analytics
R [5], [23] [4] Dose-Responsive
FunMappOne [15] Bioinformatics
https://github.com/Greco-Lab/FunMappOne [37], [32], [10], [12], [28],[38], [7], [5], [39],[40], [41], [27], [42] Analytics
R, Shiny [3], [43] Functional Annotation
MOSIM [18] Bioinformatics
https://doi.org/10.1186/s12859-015-0577-1 - [44], [4] modelling Simulator
R
MVDA [17] [47], [48], [49], [44],[50], [51], [52], [53] Bioinformatics
https://github.com/Greco-Lab/MVDA_package modelling
R [45], [46] [4], [54], [55], [56] Multi-view clustering
FPRF [19] Bioinformatics
https://doi.org/10.1371/journal.pone.0107801.s004 [57], [58] modelling
R [59], [60], [50], [61] [62], [31], [4] Feature Selection
GARBO [20] Bioinformatics
https://github.com/Greco-Lab/GARBO modelling
Python [63] [4] Feature Selection
INSIdE NANO [6]
http://inano.biobyte.de/ [64], [65] [4], [31], [33] Read-Across
MaNGA [21]
https://github.com/Greco-Lab/MaNGA
Python [4], [31], [66] QSAR
hyQSAR [22] [4], [31] QSAR