Table 1.
Nextcast components currently utilised and reviewed in the literature.
| Tool | Used in | Cited in | Category |
|---|---|---|---|
| eUTOPIA [14] | Bioinformatics | ||
| https://github.com/Greco-Lab/eUTOPIA | [24], [25], [5], [26], [27], [28], [29], [30] | [31], [2], [3] | Analytics |
| R, Shiny | Preprocessing | ||
| INfORM [16] | Bioinformatics | ||
| https://github.com/Greco-Lab/INfORM | [32], [33], [28], [26], [34] | [31], [2], [3], [4], [35] | Analytics |
| R, Shiny | Network Analysis | ||
| VOLTA [36] | Bioinformatics | ||
| https://github.com/fhaive/VOLTA - | - | Analytics | |
| Python | Network Analysis | ||
| BMDx [10] | Bioinformatics | ||
| https://github.com/Greco-Lab/BMDx | Analytics | ||
| R, Shiny | - | [4] | Dose-Responsive |
| TinderMIX [12] | Bioinformatics | ||
| https://github.com/grecolab/TinderMIX | Analytics | ||
| R | [5], [23] | [4] | Dose-Responsive |
| FunMappOne [15] | Bioinformatics | ||
| https://github.com/Greco-Lab/FunMappOne | [37], [32], [10], [12], [28],[38], [7], [5], [39],[40], [41], [27], [42] | Analytics | |
| R, Shiny | [3], [43] | Functional Annotation | |
| MOSIM [18] | Bioinformatics | ||
| https://doi.org/10.1186/s12859-015-0577-1 | - | [44], [4] | modelling Simulator |
| R | |||
| MVDA [17] | [47], [48], [49], [44],[50], [51], [52], [53] | Bioinformatics | |
| https://github.com/Greco-Lab/MVDA_package | modelling | ||
| R | [45], [46] | [4], [54], [55], [56] | Multi-view clustering |
| FPRF [19] | Bioinformatics | ||
| https://doi.org/10.1371/journal.pone.0107801.s004 | [57], [58] | modelling | |
| R | [59], [60], [50], [61] | [62], [31], [4] | Feature Selection |
| GARBO [20] | Bioinformatics | ||
| https://github.com/Greco-Lab/GARBO | modelling | ||
| Python | [63] | [4] | Feature Selection |
| INSIdE NANO [6] | |||
| http://inano.biobyte.de/ | [64], [65] | [4], [31], [33] | Read-Across |
| MaNGA [21] | |||
| https://github.com/Greco-Lab/MaNGA | |||
| Python | – | [4], [31], [66] | QSAR |
| hyQSAR [22] | – | [4], [31] | QSAR |