REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Recombinant Anti-CD73 antibody [EPR6114] | Abcam, Cambridge, UK | Abcam Cat# ab124725, RRID:AB_10976033 |
Anti-CD164 (H-4) monoclonal antibody | Santa Cruz Biotechnology, TX, USA | Santa Cruz Biotechnology Cat# sc-271179, RRID:AB_10613973 |
Anti-PDPN (B-11) monoclonal antibody | Santa Cruz Biotechnology, TX, USA | Santa Cruz Biotechnology Cat# sc-166906, RRID:AB_10610482 |
VectaShield Antifade mounting medium containing DAPI | Vector Laboratories, Burlingame, CA, USA | Vector Laboratories Cat# H-1200, RRID:AB_2336790 |
Podoplanin Monoclonal Antibody (NZ-1.3), PE, eBioscience™ | Thermo Fisher Scientific, Loughborough, Leicestershire, UK | Thermo Fisher Scientific Cat# 12-9381-41, RRID:AB_1582263 |
CD73 Monoclonal Antibody (AD2), FITC, eBioscience™ | Thermo Fisher Scientific, Loughborough, Leicestershire, UK | Thermo Fisher Scientific Cat# 11-0739-42, RRID:AB_10596508 |
CD146 Monoclonal Antibody (P1H12), FITC, eBioscience™ | Thermo Fisher Scientific, Loughborough, Leicestershire, UK | Thermo Fisher Scientific Cat# 11-1469-42, RRID:AB_2043805 |
Chemicals, peptides, and recombinant proteins | ||
Recombinant Human TGF-β1 (HEK293 derived) | PeproTech, London, UK | Cat#100-21 |
Dexamethasone | Sigma, UK | Cat#D4902 |
L-Proline | Sigma, UK | Cat#P5607 |
L-ascorbic acid 2-phosphate | Sigma, UK | Cat#A8960 |
3-Isobutyl-1-methylxanthine | Sigma, UK | Cat#5879 |
Sodium hydroxide | Sigma, UK | Cat#S5881 |
β-Glycerophosphate disodium salt hydrate | Sigma, UK | Cat#G9422 |
Rat-tail collagen type I (2.05 mg/ml in 0.6% acetic acid) | First Link (Ltd), UK | Cat#60-30-810 |
Critical commercial assays | ||
RNeasy Mini kit | Qiagen, Manchester, UK | Cat#74106 |
High-Capacity cDNA Reverse Transcriptase Kit | Thermo Fisher Scientific, Loughborough, Leicestershire, UK | Cat#368814 |
iTaq Universal SYBR Green Super mix | Bio-Rad, Hertfordshire, UK | Cat#1725124 |
LIVE/DEAD™ reagents | Theermo Fisher Scientific, Loughborough, Leicestershire, UK | Cat#L-3224 |
Real Architecture For 3D Tissues (RAFT™) | Lonza Bioscience | Cat#016-1R16 |
Experimental models: Cell lines | ||
hTERT-immortalised human (female) AMSCs | ATCC, MNZ, VA, USA | ATCC Cat# SCRC-4000,RRID:CVCLU602, MNZ |
Oligonucleotides | ||
Primers for CD146 Forward: GGAAGGT GTGGGTGAAAGAG |
This paper | N/A |
Primers for CD146 Reverse: GGACATTC AGGGTGCTCAG |
This paper | N/A |
Primers for CD164 Forward: CCTTAGCT TTCTCCCGAACG |
This paper | N/A |
Primers for CD164 Reverse: TGCTGGG TCGTGTTCTTG |
This paper | N/A |
Primers for CD73 Forward: ACTGGGAC ATTCGGGTTTTG |
This paper | N/A |
Primers for CD73 Reverse: CTCTTTGGA AGGTGGATTGC |
This paper | N/A |
Primers for FABP4 Forward: CATACTG GGCCAGGAATTTG |
This paper | N/A |
Primers for FABP4 Reverse: GGACAC CCCCTCTAAGGTT |
This paper | N/A |
Primers for GAPDH, NES, PDPN, PRX1, RUNX2, SOX9, TAZ, YAP, see Table S1 | This paper | N/A |
Software and algorithms | ||
FlowJo™ software | FlowJo, LLC | FlowJo, RRID:SCR_008520 |
ImageJ | ImageJ | National Institute of Health, RRID:SCR_003070 (https://imagej.nih.gov/ij/) |
GraphPad Prism version 6.0f for windows | GraphPad Prism Software, La Jolla, CA, USA | http://www.graphpad.com |