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. 2022 Mar 11;25(4):104059. doi: 10.1016/j.isci.2022.104059
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Recombinant Anti-CD73 antibody [EPR6114] Abcam, Cambridge, UK Abcam Cat# ab124725, RRID:AB_10976033
Anti-CD164 (H-4) monoclonal antibody Santa Cruz Biotechnology, TX, USA Santa Cruz Biotechnology Cat# sc-271179, RRID:AB_10613973
Anti-PDPN (B-11) monoclonal antibody Santa Cruz Biotechnology, TX, USA Santa Cruz Biotechnology Cat# sc-166906, RRID:AB_10610482
VectaShield Antifade mounting medium containing DAPI Vector Laboratories, Burlingame, CA, USA Vector Laboratories Cat# H-1200, RRID:AB_2336790
Podoplanin Monoclonal Antibody (NZ-1.3), PE, eBioscience™ Thermo Fisher Scientific, Loughborough, Leicestershire, UK Thermo Fisher Scientific Cat# 12-9381-41, RRID:AB_1582263
CD73 Monoclonal Antibody (AD2), FITC, eBioscience™ Thermo Fisher Scientific, Loughborough, Leicestershire, UK Thermo Fisher Scientific Cat# 11-0739-42, RRID:AB_10596508
CD146 Monoclonal Antibody (P1H12), FITC, eBioscience™ Thermo Fisher Scientific, Loughborough, Leicestershire, UK Thermo Fisher Scientific Cat# 11-1469-42, RRID:AB_2043805

Chemicals, peptides, and recombinant proteins

Recombinant Human TGF-β1 (HEK293 derived) PeproTech, London, UK Cat#100-21
Dexamethasone Sigma, UK Cat#D4902
L-Proline Sigma, UK Cat#P5607
L-ascorbic acid 2-phosphate Sigma, UK Cat#A8960
3-Isobutyl-1-methylxanthine Sigma, UK Cat#5879
Sodium hydroxide Sigma, UK Cat#S5881
β-Glycerophosphate disodium salt hydrate Sigma, UK Cat#G9422
Rat-tail collagen type I (2.05 mg/ml in 0.6% acetic acid) First Link (Ltd), UK Cat#60-30-810

Critical commercial assays

RNeasy Mini kit Qiagen, Manchester, UK Cat#74106
High-Capacity cDNA Reverse Transcriptase Kit Thermo Fisher Scientific, Loughborough, Leicestershire, UK Cat#368814
iTaq Universal SYBR Green Super mix Bio-Rad, Hertfordshire, UK Cat#1725124
LIVE/DEAD™ reagents Theermo Fisher Scientific, Loughborough, Leicestershire, UK Cat#L-3224
Real Architecture For 3D Tissues (RAFT™) Lonza Bioscience Cat#016-1R16

Experimental models: Cell lines

hTERT-immortalised human (female) AMSCs ATCC, MNZ, VA, USA ATCC Cat# SCRC-4000,RRID:CVCLU602, MNZ

Oligonucleotides

Primers for CD146 Forward: GGAAGGT
GTGGGTGAAAGAG
This paper N/A
Primers for CD146 Reverse: GGACATTC
AGGGTGCTCAG
This paper N/A
Primers for CD164 Forward: CCTTAGCT
TTCTCCCGAACG
This paper N/A
Primers for CD164 Reverse: TGCTGGG
TCGTGTTCTTG
This paper N/A
Primers for CD73 Forward: ACTGGGAC
ATTCGGGTTTTG
This paper N/A
Primers for CD73 Reverse: CTCTTTGGA
AGGTGGATTGC
This paper N/A
Primers for FABP4 Forward: CATACTG
GGCCAGGAATTTG
This paper N/A
Primers for FABP4 Reverse: GGACAC
CCCCTCTAAGGTT
This paper N/A
Primers for GAPDH, NES, PDPN, PRX1, RUNX2, SOX9, TAZ, YAP, see Table S1 This paper N/A

Software and algorithms

FlowJo™ software FlowJo, LLC FlowJo, RRID:SCR_008520
ImageJ ImageJ National Institute of Health, RRID:SCR_003070 (https://imagej.nih.gov/ij/)
GraphPad Prism version 6.0f for windows GraphPad Prism Software, La Jolla, CA, USA http://www.graphpad.com