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. 2022 Jan 27;37(1):ME21067. doi: 10.1264/jsme2.ME21067

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2022 by Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles.

This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 3. — Induction of Pden_0381 and Pden_0382 revealed by DNA-seq and RNA-seq.

(A) Green shading indicates regions 1 and 2 as prophage regions predicted using PhiSpy. Dots represent the transcripts of each gene. (B, C) Volcano plot showing the results of an analysis of differential expression between (B) WT with MMC vs. WT without MMC and (C) ΔrecA with MMC vs. ΔrecA without MMC. The vertical axis (y-axis) corresponds to the mean expression value of log 10 (q-value), and the horizontal axis (x-axis) represents the log₂ fold-change value. Genes above the thresholds have been highlighted in color: red and blue dots represent transcripts whose expression was up-regulated and down-regulated, respectively. The black dots indicate no significant change, positive x-values represent up-regulation, and negative x-values represent down-regulation. Lists of genes are provided in Tables S3 and S4.