REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit polyclonal anti-NIS | Proteintech | Cat# 24324-1-AP, RRID: AB_2879495 |
Rabbit polyclonal anti-VCP | Proteintech | Cat# 10736-1-AP, RRID: AB_2214635 |
Rabbit polyclonal anti-p62/SQSTM1 | Proteintech | Cat# 18420-1-AP, RRID: AB_10694431 |
Rabbit polyclonal anti-LC3B | Cell Signalling Technology | Cat# 2775, RRID: AB_915950 |
Mouse monoclonal anti-HA | BioLegend | Cat# 901501, RRID: AB_2565006 |
Mouse monoclonal anti-β-actin | Sigma-Aldrich | Cat# A1978, RRID: AB_476692 |
Bacterial and Virus Strains | ||
Subcloning Efficiency™ DH5α Competent Cells | ThermoFisher | Cat# 18265017 |
Biological Samples | ||
Human thyroid tissue | Queen Elizabeth Hospital, Birmingham | N/A |
Chemicals, Peptides, and Recombinant Proteins | ||
Astemizole | Sigma-Aldrich | Cat# 2861 |
Carebastine | Sigma-Aldrich | Cat# 24186 |
CB-5083 | Cayman Chemical | Cat# 19311 |
Chloroquine Diphosphate | Sigma-Aldrich | Cat# C6628 |
Clotrimazole | Sigma-Aldrich | Cat# C6019 |
DBeQ | Sigma-Aldrich | Cat# 506190 |
Dimethyl Sulfoxide | Sigma-Aldrich | Cat# D2650 |
Disulfiram | Sigma-Aldrich | Cat# 86720 |
Dynasore | Sigma-Aldrich | Cat# D9673 |
Ebastine | Sigma-Aldrich | Cat# E9531 |
Eeyarestatin-1 | Cayman Chemicals | Cat# 10012609 |
Fexofenadine HCL | Sigma-Aldrich | Cat# F9427 |
Formoterol Hemifumarate | Stratech Scientific | Cat# B1359 |
Imatinib Mesylate | Cambridge Bioscience | Cat# 13139 |
Niflumic Acid | Alfa Aesar | Cat# J60489 |
NMS-873 | SelleckChem | Cat# S7285 |
Phenformin HCL | Stratech Scientific | Cat# B1373 |
Phosphate Buffered Saline | ThermoFisher | Cat# 14190094 |
Pravastatin Sodium Salt | Cambridge Bioscience | Cat# 10010343 |
SAHA | Stratech Scientific | Cat# S1047 |
Selumetinib | SelleckChem | Cat# S1008 |
Sodium Iodide | Sigma-Aldrich | Cat# 383112 |
Sodium Perchlorate | Sigma-Aldrich | Cat# 410241 |
Sulconazole Nitrate | Sigma-Aldrich | Cat# 1623681 |
Terfenadine | Sigma-Aldrich | Cat# T9652 |
TRI Reagent | Sigma-Aldrich | Cat# 93289 |
Vatalanib 2HCL | Stratech Scientific | Cat# A1778 |
Vemurafenib | SelleckChem | Cat# S1267 |
Zimelidine 2HCL | Sigma-Aldrich | Cat# Z101 |
Critical Commercial Assays | ||
Lipofectamine RNAiMAX | ThermoFisher Scientific | Cat# 13778075 |
RNeasy Micro Kit | Qiagen | Cat# 74004 |
Reverse Transcription System | Promega | Cat# A3500 |
EndoFree Plasmid Maxi Kit | Qiagen | Cat# 12362 |
TaqMan® Gene Expression Master Mix | Applied Biosystems | Cat# 10525395 |
Nano-Glo Live Cell Assay Solution | Promega | Cat# N2011 |
NIS TaqMan® Gene Expression Assay | ThermoFisher Scientific | Cat# Hs00166567_m1 |
PPIA TaqMan® Gene Expression Assay | ThermoFisher Scientific | Cat# Hs04194521_s1 |
VCP TaqMan® Gene Expression Assay | ThermoFisher Scientific | Cat# HS00997642_m1 |
Deposited data | ||
The Connectivity Map (CMAP) | Subramanian et al., 2017 | https://clue.io/touchstone |
Data source file | This paper | Mendeley Data: https://doi.org/10.17632/vf3xnyxyp9.1 |
GSE27155 | Giordano et al., 2005 | https://www.ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE27155 |
GSE76039 | Landa et al., 2016 | https://www.ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE76039 |
TCGA GDAC Firehose standard data – Thyroid Carcinoma (THCA) | Broad Institute of MIT and Harvard | Firehose stddata__2016_01_28 run. https://doi.org/10.7908/C11G0KM9 |
TCGA THCA | Grossman et al., 2016 | https://portal.gdc.cancer.gov/projects/TCGA-THCA |
Thyroid carcinoma (TCGA, Firehose Legacy) | Cerami et al., 2012; Gao et al., 2013 | https://www.cbioportal.org/study/summary?id=thca_tcga |
Experimental Models: Cell Lines | ||
TPC-1 | Rebecca Schweppe’s lab | N/A |
TPC-1-YFP | This paper | N/A |
TPC-1-NIS-YFP | This paper | N/A |
8505C | DSMZ | Cat# ACC-219, RRID:CVCL_1054 |
8505C-YFP | This paper | N/A |
8505C-NIS-YFP | This paper | N/A |
MDA-MB-231 | ECACC | Cat# 92020424, RRID:CVCL_0062 |
MCF7 | ECACC | Cat# 86012803, RRID:CVCL_0031 |
MDA-MB-231-NIS | Fletcher et al., 2020 | N/A |
HeLa | ECACC | Cat# 93021013, RRID:CVCL_0030 |
Oligonucleotides | ||
MISSION VCP siRNA | Sigma-Aldrich | Cat# NM_007126 |
LgBiT (Forward)5’-GCCAAGCTTAC CATGGTCTTCACACTCGAA-3’ |
Sigma-Aldrich | Custom synthesis |
LgBiT (Reverse)5’-GGCGGTACCAC TGTTGATGGTTA CTCG-3’ |
Sigma-Aldrich | Custom synthesis |
VCP (Forward)5’-GCGGTACCGCTT CTGGAGCCGATTCA-3’ |
Sigma-Aldrich | Custom synthesis |
VCP (Reverse)5’-GCCGCCTCTAG ATTAGCCATACAGGTCATC-3’ |
Sigma-Aldrich | Custom synthesis |
NIS-SmBiT (Forward)5’-GCCGGTACC ACCATGGAGGCCGTGGAGACC-3’ |
Sigma-Aldrich | Custom synthesis |
NIS-SmBiT (Reverse)5’-GCCTCTAGA TTACAGAATCTCCTCGAACAGCCGG TAGCCGGTCACGAGGTTTGTCTCC TGCTG-3’ |
Sigma-Aldrich | Custom synthesis |
Recombinant DNA | ||
pcDNA3.1-EYFP-H148Q/I152L/F46L | Alan Verkman’s lab | N/A |
pcDNA3.1-NIS | Smith et al., 2009 | N/A |
Halo-tagSmBiT (negative control) | Caroline Gorvin’s lab | N/A |
LgBiT-PRKAR2A (positive control) | Caroline Gorvin’s lab | N/A |
SmBiT-PRKACA (positive control) | Caroline Gorvin’s lab | N/A |
pcDNA3.1-LgBiT-VCP | This paper | N/A |
pcDNA3.1-NIS-SmBiT | This paper | N/A |
Software and Algorithms | ||
GraphPad Prism Version 9 | Graphpad Software Inc | https://www.graphpad.com/scientificsoftware/prism/ |
ImageJ | National Institutes of Health | https://imagej.nih.gov/ij/ |
IBM SPSS Statistics Version 27 | IBM | https://www.ibm.com/uk-en/products/spss-statistics |
BioRender | BioRender | https://biorender.com/ |
EC50 Calculator | AAT Bioquest | https://www.aatbio.com/tools/ec50-calculator |
GEO2R | National Center for Biotechnology Information | https://www.ncbi.nlm.nih.gov/geo/geo2r/ |
DynaVenn | Chair for Clinical Bioinformatics at Saarland University | https://ccb-compute.cs.uni-saarland.de/dynavenn |
Other | ||
Prestwick Chemical Library | Birmingham Drug Discovery Facility | https://www.birmingham.ac.uk/facilities/bddf/compound-collections/index.aspx |
Opera Phenix High-Content Screening System | Perkin Elmer | Cat# HH14000000 |
Microlab STAR Liquid Handling System | Hamilton | https://www.hamiltoncompany.com/automated-liquid-handling/platforms/microlab-star |
PHERAstar FS microplate reader | BMG Labtech | https://www.bmglabtech.com/pherastar-fsx/ |
POLARstar Omega microplate reader | BMG Labtech | https://www.bmglabtech.com/polarstar-omega/ |
Multi Crystal LB 2111 Gamma Counter | Berthold | https://www.berthold.com/en/ |
7500 Real-Time PCR system | ThermoFisher Scientific | Cat# 4351105 |