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. 2022 Mar 17;29(3):502–516.e7. doi: 10.1016/j.chembiol.2021.07.016
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit polyclonal anti-NIS Proteintech Cat# 24324-1-AP, RRID: AB_2879495
Rabbit polyclonal anti-VCP Proteintech Cat# 10736-1-AP, RRID: AB_2214635
Rabbit polyclonal anti-p62/SQSTM1 Proteintech Cat# 18420-1-AP, RRID: AB_10694431
Rabbit polyclonal anti-LC3B Cell Signalling Technology Cat# 2775, RRID: AB_915950
Mouse monoclonal anti-HA BioLegend Cat# 901501, RRID: AB_2565006
Mouse monoclonal anti-β-actin Sigma-Aldrich Cat# A1978, RRID: AB_476692

Bacterial and Virus Strains

Subcloning Efficiency™ DH5α Competent Cells ThermoFisher Cat# 18265017

Biological Samples

Human thyroid tissue Queen Elizabeth Hospital, Birmingham N/A

Chemicals, Peptides, and Recombinant Proteins

Astemizole Sigma-Aldrich Cat# 2861
Carebastine Sigma-Aldrich Cat# 24186
CB-5083 Cayman Chemical Cat# 19311
Chloroquine Diphosphate Sigma-Aldrich Cat# C6628
Clotrimazole Sigma-Aldrich Cat# C6019
DBeQ Sigma-Aldrich Cat# 506190
Dimethyl Sulfoxide Sigma-Aldrich Cat# D2650
Disulfiram Sigma-Aldrich Cat# 86720
Dynasore Sigma-Aldrich Cat# D9673
Ebastine Sigma-Aldrich Cat# E9531
Eeyarestatin-1 Cayman Chemicals Cat# 10012609
Fexofenadine HCL Sigma-Aldrich Cat# F9427
Formoterol Hemifumarate Stratech Scientific Cat# B1359
Imatinib Mesylate Cambridge Bioscience Cat# 13139
Niflumic Acid Alfa Aesar Cat# J60489
NMS-873 SelleckChem Cat# S7285
Phenformin HCL Stratech Scientific Cat# B1373
Phosphate Buffered Saline ThermoFisher Cat# 14190094
Pravastatin Sodium Salt Cambridge Bioscience Cat# 10010343
SAHA Stratech Scientific Cat# S1047
Selumetinib SelleckChem Cat# S1008
Sodium Iodide Sigma-Aldrich Cat# 383112
Sodium Perchlorate Sigma-Aldrich Cat# 410241
Sulconazole Nitrate Sigma-Aldrich Cat# 1623681
Terfenadine Sigma-Aldrich Cat# T9652
TRI Reagent Sigma-Aldrich Cat# 93289
Vatalanib 2HCL Stratech Scientific Cat# A1778
Vemurafenib SelleckChem Cat# S1267
Zimelidine 2HCL Sigma-Aldrich Cat# Z101

Critical Commercial Assays

Lipofectamine RNAiMAX ThermoFisher Scientific Cat# 13778075
RNeasy Micro Kit Qiagen Cat# 74004
Reverse Transcription System Promega Cat# A3500
EndoFree Plasmid Maxi Kit Qiagen Cat# 12362
TaqMan® Gene Expression Master Mix Applied Biosystems Cat# 10525395
Nano-Glo Live Cell Assay Solution Promega Cat# N2011
NIS TaqMan® Gene Expression Assay ThermoFisher Scientific Cat# Hs00166567_m1
PPIA TaqMan® Gene Expression Assay ThermoFisher Scientific Cat# Hs04194521_s1
VCP TaqMan® Gene Expression Assay ThermoFisher Scientific Cat# HS00997642_m1

Deposited data

The Connectivity Map (CMAP) Subramanian et al., 2017 https://clue.io/touchstone
Data source file This paper Mendeley Data: https://doi.org/10.17632/vf3xnyxyp9.1
GSE27155 Giordano et al., 2005 https://www.ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE27155
GSE76039 Landa et al., 2016 https://www.ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE76039
TCGA GDAC Firehose standard data – Thyroid Carcinoma (THCA) Broad Institute of MIT and Harvard Firehose stddata__2016_01_28 run. https://doi.org/10.7908/C11G0KM9
TCGA THCA Grossman et al., 2016 https://portal.gdc.cancer.gov/projects/TCGA-THCA
Thyroid carcinoma (TCGA, Firehose Legacy) Cerami et al., 2012; Gao et al., 2013 https://www.cbioportal.org/study/summary?id=thca_tcga

Experimental Models: Cell Lines

TPC-1 Rebecca Schweppe’s lab N/A
TPC-1-YFP This paper N/A
TPC-1-NIS-YFP This paper N/A
8505C DSMZ Cat# ACC-219, RRID:CVCL_1054
8505C-YFP This paper N/A
8505C-NIS-YFP This paper N/A
MDA-MB-231 ECACC Cat# 92020424, RRID:CVCL_0062
MCF7 ECACC Cat# 86012803, RRID:CVCL_0031
MDA-MB-231-NIS Fletcher et al., 2020 N/A
HeLa ECACC Cat# 93021013, RRID:CVCL_0030

Oligonucleotides

MISSION VCP siRNA Sigma-Aldrich Cat# NM_007126
LgBiT (Forward)5’-GCCAAGCTTAC
CATGGTCTTCACACTCGAA-3’
Sigma-Aldrich Custom synthesis
LgBiT (Reverse)5’-GGCGGTACCAC
TGTTGATGGTTA
CTCG-3’
Sigma-Aldrich Custom synthesis
VCP (Forward)5’-GCGGTACCGCTT
CTGGAGCCGATTCA-3’
Sigma-Aldrich Custom synthesis
VCP (Reverse)5’-GCCGCCTCTAG
ATTAGCCATACAGGTCATC-3’
Sigma-Aldrich Custom synthesis
NIS-SmBiT (Forward)5’-GCCGGTACC
ACCATGGAGGCCGTGGAGACC-3’
Sigma-Aldrich Custom synthesis
NIS-SmBiT (Reverse)5’-GCCTCTAGA
TTACAGAATCTCCTCGAACAGCCGG
TAGCCGGTCACGAGGTTTGTCTCC
TGCTG-3’
Sigma-Aldrich Custom synthesis

Recombinant DNA

pcDNA3.1-EYFP-H148Q/I152L/F46L Alan Verkman’s lab N/A
pcDNA3.1-NIS Smith et al., 2009 N/A
Halo-tagSmBiT (negative control) Caroline Gorvin’s lab N/A
LgBiT-PRKAR2A (positive control) Caroline Gorvin’s lab N/A
SmBiT-PRKACA (positive control) Caroline Gorvin’s lab N/A
pcDNA3.1-LgBiT-VCP This paper N/A
pcDNA3.1-NIS-SmBiT This paper N/A

Software and Algorithms

GraphPad Prism Version 9 Graphpad Software Inc https://www.graphpad.com/scientificsoftware/prism/
ImageJ National Institutes of Health https://imagej.nih.gov/ij/
IBM SPSS Statistics Version 27 IBM https://www.ibm.com/uk-en/products/spss-statistics
BioRender BioRender https://biorender.com/
EC50 Calculator AAT Bioquest https://www.aatbio.com/tools/ec50-calculator
GEO2R National Center for Biotechnology Information https://www.ncbi.nlm.nih.gov/geo/geo2r/
DynaVenn Chair for Clinical Bioinformatics at Saarland University https://ccb-compute.cs.uni-saarland.de/dynavenn

Other

Prestwick Chemical Library Birmingham Drug Discovery Facility https://www.birmingham.ac.uk/facilities/bddf/compound-collections/index.aspx
Opera Phenix High-Content Screening System Perkin Elmer Cat# HH14000000
Microlab STAR Liquid Handling System Hamilton https://www.hamiltoncompany.com/automated-liquid-handling/platforms/microlab-star
PHERAstar FS microplate reader BMG Labtech https://www.bmglabtech.com/pherastar-fsx/
POLARstar Omega microplate reader BMG Labtech https://www.bmglabtech.com/polarstar-omega/
Multi Crystal LB 2111 Gamma Counter Berthold https://www.berthold.com/en/
7500 Real-Time PCR system ThermoFisher Scientific Cat# 4351105