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. 2022 Feb 14;19(3):278–283. doi: 10.20892/j.issn.2095-3941.2021.0678

Table 1.

Bioinformatics tools for identifying the coding potential of circular RNAs

Name Function
Circbase Obtain the base sequence of circRNA
ORF Finder Find possible ORFs in the selected sequence and predict amino acid sequence
IRES finder Search for IRES in the selected sequence
CircRNADB Integrated tool: search for ORF and IRES in circRNA
CircPro Integrated tool: identify circRNAs with coding potential
CircCode Integrated tool: identify circRNAs with coding potential
CircBase Integrated tool: search for ORF, IRES, and m6A modifications in circRNA
Pfam Search homology of the selected amino acid sequence