| Strain, strain background (Escherichia coli) |
OP50 |
Caenorhabditis Genetics Center (CGC) |
|
|
| Strain, strain background (E. coli) |
HT115 |
Caenorhabditis Genetics Center (CGC) |
|
|
| Genetic reagent (Caenorhabditis elegans) |
N2 |
Caenorhabditis Genetics Center (CGC) (Brenner, 1974) |
|
|
| Genetic reagent (C. elegans) |
nhr-49(nr2041) I
|
PMID:15719061 (Van Gilst et al., 2005a) |
STE68; RRID:WB-STRAIN:WBStrain00034504
|
|
| Genetic reagent (C. elegans) |
eavEx20[fmo-2p::gfp+rol-6(su1006)]
|
PMID:29508513 (Goh et al., 2018) |
VE40 |
|
| Genetic reagent (C. elegans) |
nhr-49(nr2041) I; eavEx20[fmo-2p::gfp+rol-6(su1006)]
|
This study |
STE129 |
|
| Genetic reagent (C. elegans) |
hif-1(ia4) V
|
PMID:11427734 (Jiang et al., 2001) |
ZG31; RRID:WB-STRAIN:WBStrain00040824
|
|
| Genetic reagent (C. elegans) |
nhr-49(nr2041) I; hif-1(ia4) V
|
This study |
STE130 |
|
| Genetic reagent (C. elegans) |
fmo-2(ok2147) IV
|
PMID:26586189 (Leiser et al., 2015) |
VC1668; RRID:WB-STRAIN:WBStrain00036780
|
|
| Genetic reagent (C. elegans) |
acs-2(ok2457) V
|
PMID:21704635 (Zhang et al., 2011) |
RB1899 |
|
| Genetic reagent (C. elegans) |
fmo-2(ok2147) IV; acs-2(ok2457) V
|
This study |
STE131 |
|
| Genetic reagent (C. elegans) |
nhr-49(et13) I
|
PMID:27618178 (Lee et al., 2016) |
STE110 |
|
| Genetic reagent (C. elegans) |
nhr-49(nr2041) I;glmEx5 [nhr-49p::nhr-49::gfp+myo-2p::mCherry]
|
PMID:34156142 (Naim et al., 2021) |
AGP33a |
|
| Genetic reagent (C. elegans) |
nhr-49(nr2041) I; glmEx9 [gly-19p::nhr-49::gfp+myo-2p::mCherry]
|
PMID:34156142 (Naim et al., 2021) |
AGP65 |
|
| Genetic reagent (C. elegans) |
nhr-49(nr2041)I; glmEx11 [col-12p::nhr-49::gfp+myo-2p::mCherry]
|
PMID:34156142 (Naim et al., 2021) |
AGP53 |
|
| Genetic reagent (C. elegans) |
nhr-49(nr2041)I; glmEx13 [rgef-1p::nhr-49::gfp+myo-2p::mCherry]
|
PMID:34156142 (Naim et al., 2021) |
AGP51 |
|
| Genetic reagent (C. elegans) |
nhr-49(nr2041)I; glmEx8 [myo-3p::nhr-49::gfp+myo-2p::mCherry]
|
PMID:34156142 (Naim et al., 2021) |
AGP63 |
|
| Genetic reagent (C. elegans) |
wbmEx57 [acs-2p::gfp+rol-6(su1006)]
|
PMID:25723162 (Burkewitz et al., 2015) |
WBM170 |
|
| Genetic reagent (C. elegans) |
nhr-49(nr2041) I; wbmEx57 [acs-2p::gfp+rol-6(su1006)]
|
PMID:25723162 (Burkewitz et al., 2015) |
WBM169 |
|
| Genetic reagent (C. elegans) |
glmEx5 (nhr-49p::nhr-49::gfp+myo-2p::mCherry) |
PMID:25474470 (Ratnappan et al., 2014) |
AGP25f |
|
| Genetic reagent (C. elegans) |
hif-1(ia4) V; glmEx5 (nhr-49p::nhr-49::gfp+myo-2p::mCherry) |
This study |
STE140 |
|
| Genetic reagent (C. elegans) |
hpk-1(pk1393) X; glmEx5 (nhr-49p::nhr-49::gfp+myo-2p::mCherry) |
This study |
STE142 |
|
| Genetic reagent (C. elegans) |
hpk-1(pk1393) X
|
PMID:12618396 (Raich et al., 2003) |
EK273; RRID:WB-STRAIN:WBStrain00007138
|
|
| Genetic reagent (C. elegans) |
nhr-49(nr2041) I; hpk-1(pk1393) X
|
This study |
STE132 |
|
| Genetic reagent (C. elegans) |
hif-1(ia4) V; hpk-1(pk1393) X
|
This study |
STE133 |
|
| Genetic reagent (C. elegans) |
nhr-49(et13) I; eavEx20[fmo-2p::gfp+rol-6(su1006)]
|
PMID:29508513 (Goh et al., 2018) |
STE117 |
|
| Genetic reagent (C. elegans) |
artEx12 [hpk-1p::gfp+rol-6(su1006)]
|
PMID:29036198 (Das et al., 2017) |
AVS394 |
|
| Genetic reagent (C. elegans) |
dpy-5(e907) I; sEx14068 [rCes atg-2::GFP+pCeh361]
|
PMID:15338614 (McKay et al., 2003) |
BC14068 |
|
| Genetic reagent (C. elegans) |
dpy-5(e907) I; sEx13567 [rCes lgg-1::GFP+pCeh361]
|
PMID:15338614 (McKay et al., 2003) |
BC13567 |
|
| Genetic reagent (C. elegans) |
dpy-5(e907) I; sEx10273 [rCes epg-3::GFP+pCeh361]
|
PMID:15338614 (McKay et al., 2003) |
BC10273 |
|
| Genetic reagent (C. elegans) |
adIs2122 [lgg-1p::GFP::lgg-1 + rol-6(su1006)]
|
PMID:17785524 (Kang et al., 2007) |
DA2123 |
|
| Genetic reagent (C. elegans) |
nhr-49(nr2041) I; adIs2122 [lgg-1p::GFP::lgg-1 + rol-6(su1006)]
|
This study |
STE143 |
|
| Genetic reagent (C. elegans) |
hif-1(ia4) V; adIs2122 [lgg-1p::GFP::lgg-1 + rol-6(su1006)]
|
This study |
STE144 |
|
| Genetic reagent (C. elegans) |
lgg-2(tm5755) IV
|
PMID:24374177 (Manil-Ségalen et al., 2014) |
RD220 |
|
| Genetic reagent (C. elegans) |
nhr-49(nr2041) I; lgg-2(tm5755) IV
|
This study |
STE145 |
|
| Genetic reagent (C. elegans) |
epg-6(tm8366) III
|
This study, non-outcrossed mutant obtained from NBRP; PMID:19934255
|
STE147 |
|
| Genetic reagent (C. elegans) |
nhr-49(nr2041) I; epg-6(tm8366) III
|
This study |
STE146 |
|
| Sequence-based reagent |
Source BioScience |
PMID:11099033
|
RNAi clones |
|
| Sequence-based reagent |
fmo-2_F |
This paper |
qPCR primer |
GGAACAAGCGTGTTGCTGT |
| Sequence-based reagent |
fmo-2_R |
This paper |
qPCR primer |
GCCATAGAGAAGACCATGTCG |
| Sequence-based reagent |
acs-2_F |
This paper |
qPCR primer |
AGTGAGACTTGACAGTTCCG |
| Sequence-based reagent |
acs-2_R |
This paper |
qPCR primer |
CTTGTAAGAGAGGAATGGCTC |
| Sequence-based reagent |
nhr-49_F |
This paper |
qPCR primer |
TCCGAGTTCATTCTCGACG |
| Sequence-based reagent |
nhr-49_R |
This paper |
qPCR primer |
GGATGAATTGCCAATGGAGC |
| Sequence-based reagent |
hpk-1_F |
This paper |
qPCR primer |
TGTCAAAGTGAAGCCGCTGG |
| Sequence-based reagent |
hpk-1_R |
This paper |
qPCR primer |
CGGCGCCAGTTCGTGTAGTA |
| Sequence-based reagent |
nhr-67_F |
This paper |
qPCR primer |
GAGGATGATGCGACGAGTAG |
| Sequence-based reagent |
nhr-67_R |
This paper |
qPCR primer |
TGGTCTTGAAGAGGAAGGGGA |
| Sequence-based reagent |
act-1_F |
This paper |
qPCR primer |
GCTGGACGTGATCTTACTGATTACC |
| Sequence-based reagent |
act-1_R |
This paper |
qPCR primer |
GTAGCAGAGCTTCTCCTTGATGTC |
| Sequence-based reagent |
tba-1_F |
This paper |
qPCR primer |
GTACACTCCACTGATCTCTGCTGACAAG |
| Sequence-based reagent |
tba-1_R |
This paper |
qPCR primer |
CTCTGTACAAGAGGCAAACAGCCATG |
| Sequence-based reagent |
ubc-2_F |
This paper |
qPCR primer |
AGGGAGGTGTCTTCTTCCTCAC |
| Sequence-based reagent |
ubc-2_R |
This paper |
qPCR primer |
CGGATTTGGATCACAGAGCAGC |
| Sequence-based reagent |
oac-14_F |
This paper |
qPCR primer |
TTCCAGCGACTTTTCTTTCG |
| Sequence-based reagent |
oac-14_R |
This paper |
qPCR primer |
CCCAGGATTGCTTCAATCAG |
| Sequence-based reagent |
cyp-13A11_F |
This paper |
qPCR primer |
ACACGTGGACACTTCACTATG |
| Sequence-based reagent |
cyp-13A11_R |
This paper |
qPCR primer |
TTCCGATACACTGTCGAGGTC |
| Sequence-based reagent |
cyp-25A3_F |
This paper |
qPCR primer |
agaatcgttgctccaaaacac |
| Sequence-based reagent |
cyp-25A3_R |
This paper |
qPCR primer |
ttcaaaatctccaggaacagg |
| Sequence-based reagent |
ugt-20_F |
This paper |
qPCR primer |
CCGACAAATCCCAGAGAGACA |
| Sequence-based reagent |
ugt-20_R |
This paper |
qPCR primer |
TGTCCAAAAAGAAGTACTCAACG |
| Sequence-based reagent |
atg-2_F |
This paper |
qPCR primer |
AGATGTCCGCCATAGTCTGC |
| Sequence-based reagent |
atg-2_R |
This paper |
qPCR primer |
TCTTCCTGAGCAGCGAGTTC |
| Sequence-based reagent |
epg-9_F |
This paper |
qPCR primer |
CGACGAAAACCGAGATTCCC |
| Sequence-based reagent |
epg-9_R |
This paper |
qPCR primer |
TGAGCCAGCGATTGTTTGTG |
| Sequence-based reagent |
lgg-2_F |
This paper |
qPCR primer |
GCAGTTTACCACTTATGGATCGC |
| Sequence-based reagent |
lgg-2_R |
This paper |
qPCR primer |
CGTTCATTGACGAGCAGGAAG |
| Sequence-based reagent |
atg-13_F |
This paper |
qPCR primer |
AAGCAGCTGAAAACTGCTCC |
| Sequence-based reagent |
atg-13_R |
This paper |
qPCR primer |
CGGAGAACGAATTGACGTGTT |
| Sequence-based reagent |
Random primers |
Invitrogen |
48190-011 |
|
| Sequence-based reagent |
dNTPs |
Fermentas |
R0186 |
|
| Chemical compound, drug |
Carbenicillin |
BioBasic |
CDJ469 |
|
| Chemical compound, drug |
IPTG |
Santa Cruz |
sc-202185B |
CAS 367-93-1 |
| Chemical compound, drug |
Tetracycline |
BioBasic |
TB0504 |
|
| Chemical compound, drug |
RNAseOUT |
Invitrogen |
10777-019 |
|
| Chemical compound, drug |
Fast SYBR Master Mix |
Life Technologies |
4385612 |
|
| Chemical compound, drug |
Levamisole |
Sigma |
L9756 |
|
| Chemical compound, drug |
H2S |
AirGas, Seattle, WA |
X02NI99CP581327 |
|
| Chemical compound, drug |
5000 ppm O2 balanced with N2
|
Praxair Canada |
NI OX5000C−T |
|
| Software, algorithm |
ImageJ |
PMID:22930834
|
|
https://imagej.nih.gov/ij/index.html
|
| Software, algorithm |
Trimmomatic version 0.36 |
PMID:24695404
|
RRID:SCR_011848
|
|
| Software, algorithm |
Salmon version 0.9.1 |
PMID:28263959
|
RRID:SCR_017036
|
https://combine-lab.github.io/salmon/
|
| Software, algorithm |
tximport |
PMID:26925227
|
RRID:SCR_016752
|
https://github.com/mikelove/tximport
|
| Software, algorithm |
edgeR |
PMID:19910308
|
RRID:SCR_012802
|
http://bioconductor.org/packages/edgeR/
|
| Software, algorithm |
eVITTA |
PMID:34019643
|
|
https://tau.cmmt.ubc.ca/eVITTA/
|
