Table 1.
Penta-primer amplification refractory mutation system (PARMS) single-nucleotide polymorphism (SNP) markers used for fine-mapping of the BnC08.cds gene.
| Marker name | SNP position | Primer | |
|---|---|---|---|
| Name | Sequence | ||
| M1 | 44,420,751 | M1-F | AGAAACTTAGAGCATGATTATCGGG |
| M1-Rg | GAAGGTGACCAAGTTCATGCTCGTTTTCAATTTTTTTTTTCATCAG | ||
| M1-Ra | GAAGGTCGGAGTCAACGGATTCGTTTTCAATTTTTTTTTTCATCAA | ||
| M2 | 46,664,419 | M2-F | ATAAGATTTGACGAGGTTTGAATG |
| M2-Rg | GAAGGTGACCAAGTTCATGCTTTCATAGATTTTAGAGAAATTAATATTCTG | ||
| M2-Ra | GAAGGTCGGAGTCAACGGATTTTCATAGATTTTAGAGAAATTAATATTCTA | ||
| M3 | 47,651,192 | M3-F | GACGGAATCGGATAATCGGAG |
| M3-Rg | GAAGGTGACCAAGTTCATGCTCACGTACGCACCGCTAAATG | ||
| M3-Ra | GAAGGTCGGAGTCAACGGATTCACGTACGCACCGCTAAATA | ||
| M4 | 48,137,207 | M4-F | TTGTTTAGGGCTTTAGTTTTTGTGG |
| M4-Rg | GAAGGTGACCAAGTTCATGCTCCAGTCAAGTATCAAGGCGTTGAG | ||
| M4-Ra | GAAGGTCGGAGTCAACGGATTCCAGTCAAGTATCAAGGCGTTGAA | ||
| M5 | 48,165,304 | M5-Fc | GAAGGTGACCAAGTTCATGCTTTTGTTGTAAGAAGAATTTGTTGGC |
| M5-Ft | GAAGGTCGGAGTCAACGGATTTTTGTTGTAAGAAGAATTTGTTGGT | ||
| M5-R | CACCATAGATTGACTTGGACACAGAC | ||
| M6 | 48,394,029 | M6-Fc | GAAGGTGACCAAGTTCATGCTAATTATTTTCGTTTCATAATGTATACAAAC |
| M6-Ft | GAAGGTCGGAGTCAACGGATTAATTATTTTCGTTTCATAATGTATACAAAT | ||
| M6-R | ATTATATTTACTAAATAACCATCTTATGCTG | ||
| M7 | 48,444,442 | M7-F | CTTTAGTGAGAATGTCAGCCTTTTG |
| M7-Rc | GAAGGTGACCAAGTTCATGCTACGTAGAGCATATTGCAGGAAGC | ||
| M7-Rt | GAAGGTCGGAGTCAACGGATTACGTAGAGCATATTGCAGGAAGT | ||
| M8 | 48,637,321 | M8-Fc | GAAGGTGACCAAGTTCATGCTGTATGAATACAAATATGTAGTTATATAGAAAAAC |
| M8-Ft | GAAGGTCGGAGTCAACGGATTGTATGAATACAAATATGTAGTTATATAGAAAAAT | ||
| M8-R | AGAGTGATGAACGAAAAAAACAAG | ||
| M9 | 49,509,367 | M9-Fc | GAAGGTGACCAAGTTCATGCTAAAAATTTTAGGCAATGATATCCTC |
| M9-Ft | GAAGGTCGGAGTCAACGGATTAAAAATTTTAGGCAATGATATCCTT | ||
| M9-R | AAAACCTAAAATGATGCAGCTCTAC | ||
| M10 | 50,875,750 | M10-Fc | GAAGGTGACCAAGTTCATGCTCAGTTGAGAAAATCGGTCGAG |
| M10-Ft | GAAGGTCGGAGTCAACGGATTCAGTTGAGAAAATCGGTCGAA | ||
| M10-R | CAGAGATAAACTAATCAGACACAGACAG | ||