TABLE 1.
Significant SNPs from linear regression and case-control GWAS. Table displaying information for significant SNPs identified in linear regression EMMAX GWAS with weaning tFEC phenotypes and recessive, dominant or additive inheritance models and case-control EMMAX GWAS with a recessive inheritance model. A, additive; CC, case-control; Chr, chromosome; D, dominant; FDR, false discovery rate; LR, linear regression; MAF, minor allele frequency; PVE, proportion of variance explained; R, recessive.
Model | Chr | rs Number | Position bp | P-Value | MAF | PVE | Gene | |
Unadjusted | FDR | |||||||
LR-R | 5 | rs405327900 | 88,129,857 | 3.34e-08 | 0.0169 | 0.3532 | 0.0539 | EDIL3 |
5 | rs413712238 | 88,154,411 | 3.34e-08 | 0.0084 | 0.3511 | 0.0539 | ||
5 | rs417983470 | 88,160,689 | 6.66e-08 | 0.0112 | 0.3511 | 0.0516 | ||
5 | rs416102123 | 88,144,942 | 7.82e-08 | 0.0099 | 0.3500 | 0.0511 | ||
LR-A | 2 | rs428768700 | 14,076,309 | 1.49e-08 | 0.0075 | 0.0214 | 0.0567 | PALM2AKAP2 |
LR-D | 2 | rs428768700 | 14,076,309 | 1.49e-08 | 0.0075 | 0.0214 | 0.0567 | PALM2AKAP2 |
10 | rs417380632 | 6,660,635 | 2.32e-07 | 0.0588 | 0.3671 | 0.0475 | 24 kpb 5′ of PCDH17 | |
CC-R | 9 | rs416881989 | 5,046,485 | 1.01e-08 | 0.0051 | 0.4218 | 0.0580 | ADGRB3 |
9 | rs421657777 | 5,325,635 | 5.81e-08 | 0.0147 | 0.4786 | 0.0521 |