TABLE 3.

Results from ConSite transcription factor binding site (TFBS) analysis showing differences between reference and alternate allele sequences. SNPs rs405327900 and rs416102123 had predicted TFBS score differences between their reference and alternate alleles. (*) denotes transcription factor is only present in alternate allele sequence, (＾) denotes transcription factor is only present in reference allele sequence.

Transcription Factor	Score difference Alt vs. Ref
rs405327900
TBXT/Brachyury	−2.308
c-Fos*	+8.141
rs416102123
REL class	+0.148
c-Rel	+0.844
p65/RelA	+1.310
IRF1^	−10.652