Table 2.
List of the variants of 5S rDNA unit in C. elegans (N2a) used in this study
| Variant | Size (bp) | Copy number | Sequence variation relative to cel-5S unit 1.1 |
|---|---|---|---|
| unit 1.1 | 976 | Dynamic | Not applicable |
| unit 1.2 | 971 | 2 | 766_771delinsC |
| unit 1.3 | 972 | 16 | 99_102del, 162C > G |
| unit 1.4 | 976 | 2 | 621 T > G |
| unit 1.5 | 946 | 3 | 780_809del, 621 T > G |
| unit 1.6 | 972 | 2 | 99_102del, 162C > G, 220C > A, 621 T > G |
| unit 1.7 | 976 | 4 | 220C > A, 621 T > G |
| unit 1.9 | 976 | 9 | 99_102del, 162C > G, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 339C > T, 621 T > G |
| unit 1.10 | 976 | 1 | 99_102del, 162C > G, 318 T > C, 325_326insCAAT, 329G > A, 332 T > G, 339C > T, 621 T > G |
| unit 1.11 | 976 | 3 | 99_102del, 162C > G, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 339C > T, 431 T > G, 621 T > G |
| unit 1.12 | 963 | 4 | 99_102del, 162C > G, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 339C > T, 393_405del, 431 T > G, 621 T > G |
| unit 1.13 | 976 | 6 | 99_102del, 162C > G, 318 T > C, 325_326insCAAT, 329G > A, 332 T > G, 339C > T, 431 T > G, 621 T > G, 636 T > G |
| unit 1.14 | 980 | 6 | 309 T > C, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 621 T > G |
| unit 1.15 | 950 | 1 | 780_809del, 220C > A, 309 T > C, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 621 T > G |
| unit 1.16 | 976 | 1 | 99_102del, 162C > G, 309 T > C, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 621 T > G |
| unit 1.18 | 984 | 1 | 99_102del, 162C > G, 309 T > C, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 354_355insGGTATT, 367A > T, 371 T > A, 621 T > G, 718_719insGA |
| unit 1.19 | 982 | 3 | 99_102del, 162C > G, 309 T > C, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 354_355insGGTATT, 367A > T, 371 T > A, 621 T > G |
| unit 1.20 | 972 | 15 | 99_102del, 162C > G, 431 T > G, 621 T > G |
| unit 1.21 | 976 | 1 | 162C > G, 621 T > G |
| unit 1.23 | 972 | 29 | 99_102del, 162C > G, 621 T > G |
| unit 1.24 | 942 | 7 | 780_809del, 99_102del, 162C > G, 621 T > G |
| unit 1.26 | 976 | 1 | 99_102del, 162C > G, 335G > C, 407C > T, 621 T > G |
| unit s1a | 975 | 0 | 99_102del, 162C > G, 318_319insA, 390delC, 621 T > G |
| unit s2a | 981 | 0 | 354_355insGGTATT, 367A > T, 371 T > A, 545G > A, 621 T > G |
| unit s3a | 972 | 0 | 325_326insCAAT, 329G > A, 332 T > G, 339C > T, 431 T > G,621 T > G |
aCombinations of variants in s1-s3 are not identified in the 5S rDNA cluster. Del deletion, Ins insertion, Delins deletion followed by insertion