Skip to main content
. 2022 Mar 4;39(3):msac048. doi: 10.1093/molbev/msac048

Table 1.

Estimates of α from SLiM Simulation.

Migration Sex Expected FST F IT a K S b (%) K A b (%) π S c Local (%) π A c Local (%) True ωad DFE-Alpha ωa Multi-DFE ωa (best) True αd Naiveeα DFE-Alpha α Multi-DFE α (best) Asymptotic-MK α
0.000158 1 0.76 0.76 12.39 2.19 0.72 0.33 0.077 0.174 0.126 0.43 −0.02 0.69 0.71 0.40
0.000158 8 0.76 0.77 14.06 2.64 0.31 0.18 0.053 0.052 0.061 0.28 −0.17 0.26 0.33 0.27
0.000158 80 0.76 0.80 14.75 3.09 0.11 0.09 0.018 0.001 0.016 0.09 −0.42 0.01 0.08 0.07
0.001418 1 0.25 0.25 14.03 2.24 0.90 0.39 0.068 0.081 0.094 0.43 −0.20 0.48 0.59 0.39
0.001418 8 0.25 0.28 14.55 2.43 0.51 0.26 0.053 0.067 0.086 0.32 −0.34 0.39 0.51 0.27
0.001418 80 0.25 0.36 14.98 2.77 0.18 0.13 0.025 0.036 0.002 0.13 −0.59 0.19 0.01 0.01
0.00898 1 0.05 0.04 14.31 2.24 0.93 0.40 0.066 0.073 0.077 0.42 −0.23 0.45 0.49 0.35
0.00898 8 0.05 0.04 14.70 2.36 0.56 0.28 0.053 0.066 0.080 0.33 −0.38 0.40 0.50 0.25
0.00898 80 0.05 0.08 15.06 2.64 0.20 0.14 0.025 0.036 0.086 0.15 −0.67 0.20 0.49 0.09

Note.—The table shows key simulation parameters, simulated values of differentiation, divergence, diversity, α, and ωa in a structured facultatively asexual population with no local adaptation. It also shows model-based estimates of ωa and α obtained from DFE-alpha, Multi-DFE and asymptotic-MK. For Multi-DFE, we show the estimate from the best-fitting model, as inferred using the Akaike information criterion. A naïve estimate of α based on simple counts is downwardly biased, estimates from DFE-alpha and Multi-DFE tend to be slightly upwardly biased, and estimates from asymptotic MK are remarkably robust. Rows show increasing rates of migration (decreasing FST) and increasing rates of asexuality (every generation, 1-in-8 generations, 1-in-80 generations), and sampling is based on a single diploid individual from each deme.

a

Total inbreeding, as used as a proxy for FST in our analysis.

b

Divergence from ancestral population.

c

Mean within-deme diversity, calculated from a single diploid individual.

d

Rate of adaptive substitution observed in the simulation.

e

Estimated from simulated data, using 1 − (DNPS/DSPN).