TABLE 3.

Genetic variation across the whole genome of 21 wild rice samples, excluding hybrids.

Species	Samples	Total number of variants	SNP (%)	InDel (%)	Total number of heterozygous SNV position	Heterozygous SNP variation across the whole genome (%)	*Unique heterozygous SNP (%)
O. rufipogon type taxa	WR24	1,918,262	90	6	632,272	0.16	48
O. meridionalis	WR37	3,745,572	87	8	827,689	0.23	6
	WR81	7,310,928	87	8	1,365,802	0.38	8
	WR100	6,007,510	87	8	1,175,173	0.33	4
	WR103	6,256,551	87	8	1,198,555	0.34	5
	WR111	3,899,236	88	7	894,765	0.25	5
	WR126	5,194,396	87	8	1,125,277	0.32	10
	WR133	6,545,660	87	8	1,227,038	0.35	4
	WR143	5,611,030	87	8	1,109,062	0.31	5
	WR171	3,852,279	88	7	966,368	0.27	6
	WR184	5,421,763	87	8	1,074,882	0.30	5
	WR195	5,985,028	87	8	1,168,776	0.33	6
	WR207	6,520,874	87	8	1,210,794	0.34	12
	WR219	6,951,983	87	8	1,312,291	0.37	6
	WR230	6,694,713	87	8	1,261,074	0.36	5
	WR233	3,623,110	88	7	876,065	0.25	4
	WR242	6,849,045	87	8	1,299,754	0.37	6
	WR256	5,991,356	87	8	1,119,055	0.32	6
	WR265	6,625,636	87	8	1,255,312	0.35	5
	WR280	6,621,409	87	8	1,249,681	0.35	5
	WR287	5,722,665	87	8	1,105,062	0.31	5

*Unique heterozygous SNP: SPNs that are uniquely present in one sample but absent in other samples.