TABLE 2.
Test results of fitting the HDP-MSN (hierarchical Dirichlet process, multi-site neutral) model of Harris et al. (2017) to the 2-sites meta-community (pair-wise combination of CM, CNA, CNB) (p > 0.05 indicating significant or satisfactory fitting to the MSN)*.
| ID | L O | θ | m | M-value | Meta-community |
Local Community |
||||||
| LM | N M | N | P M | LL | N L | N | P L | |||||
| Meta-community = CM (semen) and CNA (vaginal before): i.e., Semen-Vaginal before Sex | ||||||||||||
| 1 | –294.942 | 38.974 | 0.269 | 127.603 | –281.606 | 891 | 2,500 | 0.356 | –281.056 | 827 | 2,500 | 0.331 |
| 2 | −1, 249.588 | 167.832 | 0.019 | 48.708 | −1, 178.198 | 477 | 2,500 | 0.191 | −1, 234.428 | 1,016 | 2,500 | 0.406 |
| 3 | –606.843 | 104.394 | 0.018 | 46.314 | –586.250 | 930 | 2,500 | 0.372 | –607.972 | 1,267 | 2,500 | 0.507 |
| 6 | –941.873 | 117.855 | 0.025 | 48.872 | –912.698 | 859 | 2,500 | 0.344 | –950.423 | 1,395 | 2,500 | 0.558 |
| 7 | –641.123 | 113.683 | 0.013 | 34.910 | –613.257 | 792 | 2,500 | 0.317 | –636.724 | 1,162 | 2,500 | 0.465 |
| 8 | –519.786 | 56.211 | 0.145 | 185.879 | –545.308 | 1,648 | 2,500 | 0.659 | –521.949 | 1,292 | 2,500 | 0.517 |
| 9 | –557.682 | 126.973 | 0.030 | 29.291 | –523.500 | 701 | 2,500 | 0.280 | –545.089 | 1,039 | 2,500 | 0.416 |
| 12 | –318.186 | 47.318 | 0.242 | 67.048 | –316.137 | 1,196 | 2,500 | 0.478 | –323.589 | 1,367 | 2,500 | 0.547 |
| 14 | –637.346 | 139.845 | 0.009 | 33.859 | –591.837 | 599 | 2,500 | 0.240 | –619.023 | 975 | 2,500 | 0.390 |
| 15 | –445.940 | 80.545 | 0.044 | 35.486 | –426.659 | 926 | 2,500 | 0.370 | –432.225 | 1,072 | 2,500 | 0.429 |
| 16 | –602.985 | 151.693 | 0.011 | 26.547 | –564.504 | 752 | 2,500 | 0.301 | –590.195 | 1,061 | 2,500 | 0.424 |
| 17 | –722.901 | 154.230 | 0.007 | 20.553 | –716.408 | 1,150 | 2,500 | 0.460 | –750.418 | 1,676 | 2,500 | 0.670 |
| 18 | –649.086 | 103.733 | 0.015 | 35.366 | –639.784 | 1,090 | 2,500 | 0.436 | –658.020 | 1,420 | 2,500 | 0.568 |
| 21 | −1, 041.511 | 162.229 | 0.019 | 41.977 | −1, 007.968 | 791 | 2,500 | 0.316 | −1, 050.771 | 1,406 | 2,500 | 0.562 |
| 22 | –565.380 | 85.202 | 0.016 | 46.302 | –571.889 | 1,353 | 2,500 | 0.541 | –584.253 | 1,574 | 2,500 | 0.630 |
| 23 | –687.356 | 49.269 | 0.066 | 139.642 | –778.801 | 2,240 | 2,500 | 0.896 | –682.369 | 1,149 | 2,500 | 0.460 |
| 24 | –463.632 | 39.916 | 0.229 | 384.019 | –514.220 | 2,094 | 2,500 | 0.838 | –455.452 | 998 | 2,500 | 0.399 |
| 25 | −1, 050.043 | 89.466 | 0.023 | 92.515 | −1, 095.046 | 1,699 | 2,500 | 0.680 | −1, 053.375 | 1,268 | 2,500 | 0.507 |
| 26 | –977.067 | 152.656 | 0.011 | 31.491 | –973.298 | 1,189 | 2,500 | 0.476 | −1, 002.310 | 1,629 | 2,500 | 0.652 |
| 27 | –886.104 | 75.389 | 0.029 | 99.172 | –932.443 | 1,647 | 2,500 | 0.659 | –886.128 | 1,251 | 2,500 | 0.500 |
| 28 | –838.843 | 60.589 | 0.103 | 335.688 | –875.010 | 1,775 | 2,500 | 0.710 | –790.556 | 342 | 2,500 | 0.137 |
| 29 | −1, 029.231 | 114.178 | 0.014 | 51.628 | −1, 097.116 | 1,962 | 2,500 | 0.785 | −1, 068.638 | 1,509 | 2,500 | 0.604 |
| 30 | –837.386 | 105.981 | 0.009 | 28.098 | –857.412 | 1,513 | 2,500 | 0.605 | –878.143 | 1,861 | 2,500 | 0.744 |
| Mean | –720.210 | 101.659 | 0.059 | 86.564 | –721.711 | 1,229 | 2,500 | 0.492 | –721.874 | 1,242 | 2,500 | 0.497 |
| Passing rate (%) | 100% | 100% | ||||||||||
| Meta-community = CM (semen) and CNB (vaginal after): i.e., Semen-Vaginal after Sex | ||||||||||||
| 1 | –289.030 | 43.371 | 0.204 | 105.245 | –280.867 | 1,056 | 2,500 | 0.422 | –282.879 | 1,056 | 2,500 | 0.426 |
| 2 | –727.836 | 129.926 | 0.024 | 39.766 | –688.822 | 677 | 2,500 | 0.271 | –718.518 | 677 | 2,500 | 0.442 |
| 3 | –511.738 | 66.266 | 0.054 | 99.539 | –493.772 | 958 | 2,500 | 0.383 | –498.098 | 958 | 2,500 | 0.418 |
| 6 | –524.047 | 62.040 | 0.104 | 109.920 | –516.595 | 1,127 | 2,500 | 0.451 | –513.470 | 1,127 | 2,500 | 0.437 |
| 7 | –922.580 | 120.417 | 0.016 | 41.932 | –900.271 | 950 | 2,500 | 0.380 | –936.888 | 950 | 2,500 | 0.585 |
| 8 | –664.375 | 80.807 | 0.036 | 74.639 | –683.925 | 1,547 | 2,500 | 0.619 | –680.023 | 1,547 | 2,500 | 0.586 |
| 9 | –734.546 | 127.632 | 0.013 | 31.013 | –707.562 | 874 | 2,500 | 0.350 | –740.545 | 874 | 2,500 | 0.537 |
| 12 | –327.890 | 66.144 | 0.022 | 42.932 | –314.591 | 994 | 2,500 | 0.398 | –327.296 | 994 | 2,500 | 0.494 |
| 14 | –619.570 | 92.639 | 0.036 | 51.576 | –591.182 | 810 | 2,500 | 0.324 | –610.084 | 810 | 2,500 | 0.445 |
| 15 | –347.050 | 36.931 | 0.073 | 194.679 | –366.486 | 1,617 | 2,500 | 0.647 | –350.091 | 1,617 | 2,500 | 0.533 |
| 16 | –657.279 | 148.840 | 0.012 | 26.854 | –629.818 | 838 | 2,500 | 0.335 | –658.247 | 838 | 2,500 | 0.506 |
| 17 | –668.278 | 122.494 | 0.013 | 23.030 | –666.608 | 1,219 | 2,500 | 0.488 | –696.241 | 1,219 | 2,500 | 0.694 |
| 18 | –660.140 | 139.453 | 0.015 | 27.505 | –626.643 | 757 | 2,500 | 0.303 | –659.396 | 757 | 2,500 | 0.495 |
| 21 | –845.976 | 140.958 | 0.041 | 41.885 | –799.162 | 567 | 2,500 | 0.227 | –836.271 | 567 | 2,500 | 0.428 |
| 22 | –600.325 | 102.615 | 0.022 | 37.687 | –575.632 | 844 | 2,500 | 0.338 | –595.463 | 844 | 2,500 | 0.465 |
| 23 | –739.692 | 52.565 | 0.051 | 126.679 | –836.581 | 2,237 | 2,500 | 0.895 | –753.233 | 2,237 | 2,500 | 0.594 |
| 24 | –673.891 | 54.907 | 0.055 | 140.013 | –756.745 | 2,174 | 2,500 | 0.870 | –684.364 | 2,174 | 2,500 | 0.554 |
| 25 | −1, 040.640 | 75.592 | 0.037 | 141.517 | −1, 102.943 | 1,898 | 2,500 | 0.759 | −1, 028.525 | 1,898 | 2,500 | 0.442 |
| 26 | −1, 041.126 | 127.860 | 0.013 | 41.347 | −1, 077.386 | 1,715 | 2,500 | 0.686 | −1, 091.201 | 1,715 | 2,500 | 0.759 |
| 27 | –794.096 | 49.538 | 0.115 | 397.648 | –863.984 | 2,040 | 2,500 | 0.816 | –767.550 | 2,040 | 2,500 | 0.293 |
| 28 | –957.051 | 62.429 | 0.084 | 326.120 | −1, 042.312 | 2,170 | 2,500 | 0.868 | –920.118 | 2,170 | 2,500 | 0.235 |
| 29 | –860.525 | 55.146 | 0.059 | 231.842 | –986.236 | 2,364 | 2,500 | 0.946 | –843.578 | 2,364 | 2,500 | 0.364 |
| 30 | –768.696 | 64.007 | 0.020 | 54.922 | –811.856 | 1,772 | 2,500 | 0.709 | –791.770 | 1,772 | 2,500 | 0.611 |
| Mean | –694.625 | 87.938 | 0.049 | 104.708 | –709.564 | 1,357 | 2,500 | 0.543 | –694.950 | 1,357 | 2,500 | 0.493 |
| Passing rate (%) | 100% | 100% | ||||||||||
| Meta-community = CNA + CNB: i.e., two vaginal samples | ||||||||||||
| 1 | –117.932 | 6.528 | 0.151 | 85.064 | –146.579 | 2,029 | 2,500 | 0.812 | –115.060 | 1,077 | 2,500 | 0.431 |
| 2 | –687.812 | 52.987 | 0.026 | 80.201 | –806.923 | 2,385 | 2,500 | 0.954 | –704.006 | 1,556 | 2,500 | 0.622 |
| 3 | –237.691 | 36.215 | 0.001 | 4.373 | –285.973 | 2,096 | 2,500 | 0.838 | –288.602 | 2,197 | 2,500 | 0.879 |
| 6 | –558.172 | 98.290 | 0.006 | 15.714 | –571.206 | 1,444 | 2,500 | 0.578 | –591.573 | 1,820 | 2,500 | 0.728 |
| 7 | –495.413 | 39.212 | 0.009 | 38.126 | –615.493 | 2,410 | 2,500 | 0.964 | –543.052 | 1,871 | 2,500 | 0.748 |
| 8 | –274.276 | 51.506 | 0.002 | 4.737 | –320.860 | 2,072 | 2,500 | 0.829 | –327.750 | 2,184 | 2,500 | 0.874 |
| 9 | –375.537 | 72.550 | 0.003 | 6.641 | –388.970 | 1,514 | 2,500 | 0.606 | –402.978 | 1,779 | 2,500 | 0.712 |
| 12 | –211.853 | 24.140 | 0.001 | 3.883 | –255.803 | 2,085 | 2,500 | 0.834 | –253.221 | 2,145 | 2,500 | 0.858 |
| 14 | –211.848 | 46.287 | 0.001 | 3.275 | –243.275 | 1,846 | 2,500 | 0.738 | –247.457 | 2,038 | 2,500 | 0.815 |
| 15 | –120.950 | 23.085 | 0.000 | 1.592 | –144.765 | 1,868 | 2,500 | 0.747 | –145.086 | 1,899 | 2,500 | 0.760 |
| 16 | –221.478 | 49.669 | 0.001 | 3.189 | –253.301 | 1,905 | 2,500 | 0.762 | –260.003 | 2,068 | 2,500 | 0.827 |
| 17 | –377.262 | 34.993 | 0.003 | 11.786 | –443.105 | 2,172 | 2,500 | 0.869 | –418.600 | 1,968 | 2,500 | 0.787 |
| 18 | –255.349 | 42.477 | 0.002 | 4.744 | –300.117 | 2,090 | 2,500 | 0.836 | –306.651 | 2,219 | 2,500 | 0.888 |
| 21 | –940.462 | 130.900 | 0.012 | 29.270 | –947.139 | 1,351 | 2,500 | 0.540 | –978.608 | 1,844 | 2,500 | 0.738 |
| 22 | –267.858 | 38.835 | 0.001 | 4.851 | –306.574 | 1,996 | 2,500 | 0.798 | –316.669 | 2,160 | 2,500 | 0.864 |
| 23 | –612.796 | 32.891 | 0.041 | 133.344 | –782.288 | 2,465 | 2,500 | 0.986 | –636.483 | 1,830 | 2,500 | 0.732 |
| 24 | –352.422 | 58.629 | 0.004 | 8.755 | –405.049 | 2,085 | 2,500 | 0.834 | –380.030 | 1,539 | 2,500 | 0.616 |
| 25 | –342.730 | 19.430 | 0.049 | 100.793 | –477.573 | 2,462 | 2,500 | 0.985 | –356.722 | 1,688 | 2,500 | 0.675 |
| 26 | –363.988 | 22.576 | 0.073 | 118.692 | –488.442 | 2,457 | 2,500 | 0.983 | –365.290 | 1,295 | 2,500 | 0.518 |
| 27 | –270.576 | 14.159 | 0.050 | 94.893 | –377.782 | 2,429 | 2,500 | 0.972 | –274.642 | 1,391 | 2,500 | 0.556 |
| 28 | –205.859 | 12.578 | 0.126 | 152.710 | –290.304 | 2,433 | 2,500 | 0.973 | –202.680 | 1,105 | 2,500 | 0.442 |
| 29 | –298.507 | 15.997 | 0.071 | 137.058 | –420.280 | 2,451 | 2,500 | 0.980 | –306.712 | 1,524 | 2,500 | 0.610 |
| 30 | –322.943 | 16.873 | 0.059 | 123.100 | –434.570 | 2,425 | 2,500 | 0.970 | –329.146 | 1,443 | 2,500 | 0.577 |
| Mean | –353.205 | 40.905 | 0.030 | 50.730 | –422.016 | 2,107 | 2,500 | 0.843 | –380.479 | 1,767 | 2,500 | 0.707 |
| Passing rate (%) | 100% | 100% | ||||||||||
*The interpretations of the symbols are the exactly the same as in Table 1.