Table 2.
GENERAL | |
Image acquisition | Acquisition protocols and scanner parameters: equipment vendor, reconstruction algorithms and filters, field of view and acquisition matrix dimensions, MRI sequence parameters, PET acquisition time and injected dose, CT x-ray energy (kVp) and exposure (mAs), etc. |
Volumetric analysis | Imaging volumes are analyzed as separate images (2D) or as fully-connected volumes (3D). |
Workflow structure | Sequence of processing steps leading to the extraction of features. |
Software | Software type and version of code used for the computation of features. |
| |
IMAGE PRE-PROCESSING | |
Conversion | How data were converted from input images: e.g, conversion of PET activity counts to SUV, calculation of ADC maps from raw DW-MRI signal, etc. |
Processing | Image processing steps taken after image acquisition: e.g., noise filtering, intensity non-uniformity correction in MRI, partial-volume effect corrections, etc. |
| |
ROI SEGMENTATION a;b | How regions of interests (ROIs) were delineated in the images: software and/or algorithms used, how many different persons and what expertise (specialty, experience), how a consensus was obtained if several persons carried out the segmentation, in automatic or semi-automatic mode, etc. |
| |
INTERPOLATION | |
Voxel dimensions | Original and interpolated voxel dimensions. |
Image interpolation method | Method used to interpolate voxels values (e.g, linear, cubic, spline, etc.) as well as how original and interpolated grids were aligned. |
Intensity rounding | Rounding procedures for non-integer interpolated gray levels (if applicable), e.g., rounding of Hounsfield units in CT imaging following interpolation. |
ROI interpolation method | Method used to interpolate ROI masks. Definition of how original and interpolated grids were aligned. |
ROI partial volume | Minimum partial volume fraction required to include an interpolated ROI mask voxel in the interpolated ROI (if applicable): e.g., a minimum partial volume fraction of 0.5 when using linear interpolation. |
| |
ROI RE-SEGMENTATION | |
Inclusion/exclusion criteria | Criteria for inclusion and/or exclusion of voxels from the ROI intensity mask (if applicable), e.g., the exclusion of voxels with Hounsfield units values outside a pre-defined range inside the ROI intensity mask in CT imaging. |
| |
IMAGE DISCRETIZATION | |
Discretization method | Method used for discretizing image intensities prior to feature extraction: e.g., fixed bin number, fixed bin width, histogram equalization, etc. |
Discretization parameters | Parameters used for image discretization: the number of bins, the bin width and minimal value of discretization range, etc. |
| |
FEATURE CALCULATION | |
Features set | Description and formulas of all calculated features. |
Features parameters | Settings used for the calculation of features: voxel connectivity, with or without merging by slice, with or without merging directional texture matrices, etc. |
| |
CALIBRATION | |
Image processing steps | Specifying which image processing steps match the benchmarks of the IBSI. |
Features calculation | Specifying which feature calculations match the benchmarks of the IBSI. |
In order to reduce inter-observer variability, automatic and semi-automatic methods are favored.
In multimodal applications (e.g., PET/CT, PET/MRI, etc.) ROI definition may involve the propagation of contours between modalities via co-registration. In that case, the technical details of the registration should also be provided.