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. 2022 Feb 10;13(13):3674–3687. doi: 10.1039/d1sc05892d

Population of the clusters generated by adaptive sampling performed on Mpro in complex with QUB-00 006-Int-01(R) and (S). ΔΔG (kcal mol−1) is the relative free energy at 298 K. The relative binding free energies reported for QUB-00 006-Int-01(R) and (S) are calculated using the respective cluster 1 as a reference ligand.

QUB-00 006-Int-01(R) QUB-00 006-Int-01(S)
Cluster Fraction ΔΔG Cluster Fraction ΔΔG
1 0.101 0 1 0.103 0
2 0.083 0.05 2 0.093 0.03
3 0.067 0.11 3 0.088 0.04
4 0.053 0.17 4 0.065 0.12
5 0.042 0.23 5 0.059 0.14
6 0.035 0.27 6 0.054 0.17
7 0.034 0.28 7 0.049 0.19
8 0.033 0.29 8 0.039 0.25
9 0.032 0.30 9 0.033 0.29
10 0.032 0.30 10 0.031 0.31