Population of the clusters generated by adaptive sampling performed on Mpro in complex with QUB-00 006-Int-01(R) and (S). ΔΔG (kcal mol−1) is the relative free energy at 298 K. The relative binding free energies reported for QUB-00 006-Int-01(R) and (S) are calculated using the respective cluster 1 as a reference ligand.
QUB-00 006-Int-01(R) | QUB-00 006-Int-01(S) | ||||
---|---|---|---|---|---|
Cluster | Fraction | ΔΔG | Cluster | Fraction | ΔΔG |
1 | 0.101 | 0 | 1 | 0.103 | 0 |
2 | 0.083 | 0.05 | 2 | 0.093 | 0.03 |
3 | 0.067 | 0.11 | 3 | 0.088 | 0.04 |
4 | 0.053 | 0.17 | 4 | 0.065 | 0.12 |
5 | 0.042 | 0.23 | 5 | 0.059 | 0.14 |
6 | 0.035 | 0.27 | 6 | 0.054 | 0.17 |
7 | 0.034 | 0.28 | 7 | 0.049 | 0.19 |
8 | 0.033 | 0.29 | 8 | 0.039 | 0.25 |
9 | 0.032 | 0.30 | 9 | 0.033 | 0.29 |
10 | 0.032 | 0.30 | 10 | 0.031 | 0.31 |