Table 1.
Studied exon(s) | Primer | Product size (bp) | Applied enzyme | Tm | |
---|---|---|---|---|---|
Primers for PCR | 1–2 | F: 5' TTGAGGAATAACGGAGGTGAG 3' R: 5' AGGAGGAGTAGGCTGAGAAAA 3' |
1,278 | GoTaq | 59°C |
3 | F: 5' GTACTAGCCAAGCAAGTGAGTC 3' R: 5' AGCAATCGTGCCTATTACATC 3' |
1,082 | GoTaq | 59°C | |
4 | F*: 5' ATACCCTCCATTCCAGCCTGGTC 3' R*: 5' CTTCACCTGCTCTGCAGTCCATC 3' |
368 | GoTaq | 59°C | |
5–6 | F: 5' CACCATGCCGTATTCACTAA 3' R: 5' AGGGTGGAAATACAGATGGAAG 3'or R: 5' TCCCTCCCTACTCATCAAAC 3' |
798 | GoTaq | 59°C | |
7 | F: 5' TCAGTGGTGGAGTCAGGGTA 3' R: 5' CCAATGGGATAATAGCACCTAC 3' |
631 | GoTaq | 59°C | |
8 | F: 5' CTGCCAGAGGGTACAGTATGT 3' R: 5' GAGATGGGAGGATTGTTTGA 3' |
823 | GoTaq | 59°C | |
Primers for sequencing | 1–2 | F: 5' CCCCGTTCACCCCACCTACCA 3' or F: 5' TTGAGGAATAACGGAGGTGAG 3' R*: 5' GCCTGAAGGGTTAATCCTCAGCCA 3' |
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3 | F: 5' TGGTGGTGGTTCTAAGACAGATT 3' R: 5' AGAGGCATGGCTTTGTAAGTG 3' |
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4 | F*: 5' ATACCCTCCATTCCAGCCTGGTC 3' R*: 5' CTTCACCTGCTCTGCAGTCCATC 3' |
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5–6 | F: 5' CTCAAATCGTGCTCATGGAA 3' R: 5' AGGGTGGAAATACAGATGGAAG 3' or R: 5' TCCCTCCCTACTCATCAAAC 3' |
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7 | F: 5' TCAGTGGTGGAGTCAGGGTA 3' R: 5' CCAATGGGATAATAGCACCTAC 3' |
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8 | F: 5' GGCAAACAAGGGAAGAGGAAG 3' R: 5' AGCCTGGGTGACAGATTGAGA 3' |
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Primers for long PCR | 1–3 | F: 5' TGCACTGGAGCTGCCTGGTGA 3' R: 5' AGAGGCATGGCTTTGTAAGTG 3' |
2,777 | GoTaq | 60°C |
3–5 | F: 5' TGGTGGTGGTTCTAAGACAGATT 3' R: 5' GGAGGGTTGCTCTAATGCAG 3' |
6,676 | Phusion Flash | 58°C | |
5–7 | F: 5' CACCATGCCGTATTCACTAA 3' R: 5' CCAATGGGATAATAGCACCTAC 3' |
6,209 | Phusion Flash | 60°C | |
7–8 | F: 5' TCAGTGGTGGAGTCAGGGTA 3' R: 5' CACAGGGGTCAGAATCACCT 3' |
5,289 | Phusion Flash | 62°C | |
8 | F: 5' GGCAAACAAGGGAAGAGGAAG 3' R: 5' TGCTAAAAACACCCTCCAAA 3' |
6,310 | Phusion Flash | 60°C | |
Primers for the verification of exon 7 duplication | exon 7 MLPA probe hybridization site | F: 5' TACCAGGATCACCAAACTCAGAT 3' R: 5' CACAATCTGAGTTTGGTGATCCTG 3' |
Phusion Flash | 64°C |
Based on primer sequences published in (14).
F, forward; R, reverse.