Table 2:
Assembly | Annotation | Venomous | INSDC ID | Source | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Scientific classification | Sequencing� | Scaffold | |||||||||||
Superfamily | Family | Genus | Species | Sequencing platform | DoC | GC% | N50 Size (kb) | Contig N50 Size (kb) | Genome Size (Gb) | Protein-encoding genes identified | |||
Colubroidea | Viperidae | Bothrops | jararaca | Illumina; PacBio; BAC-SeqSc | 150 IL20 PB | 163.5 | 2.1 | Yes | PRJNA691605 | [29] | |||
Crotalus | viridis | Illumina; PacBio | 100 | 36.6 | 139 | 15.74 | 1.3 | Yes | PDHV00000000.1 | [20,21] | |||
tigris | Illumina; PacBio | 190 IL33 PB | 39.9/39.8 | 207,720 | 2,110 | 1.6 | 18,240 | Yes | VORL00000000 | [28] | |||
pyrrhus | Illumina | 40 | 38.5 | 5.1 | 4.1 | 1.1 | Yes | JPMF00000000.1 | [26] | ||||
horridus | Illumina | 135 | 34.3 | 23.8 | 5.8 | 1.5 | Yes | LVCR00000000.1 | [82] | ||||
Protobothrops | flavoviridis | Illumina | 96 | 38.2 | 467 | 3.8 | 1.4 | 20,540 | Yes | BFFQ00000000.1 | [15] | ||
mucrosquamatus | Illumina | 86 | 40.6 | 424 | 22 | 1.6 | 20,122 | Yes | BCNE00000000.2 | [24] | |||
Sistrurus | catenatus | Illumina, PacBio | 1,045,000 | 1.6 | Yes | PRJNA750087 | [31] | ||||||
Vipera | berus | Illumina | 121 | 41.3 | 126.6 | 11.7 | 1.5 | Yes | JTGP00000000.1 | [25] | |||
Deinagkistrodon | acutus | Illumina | ♂ 114 ♀ 238 | 2,120 | 22.42 | 1.4 | 21,194 | Yes | DQ343647.1 | [86] | |||
Colubridae | Pantherophis | guttatus | Illumina | 13 | 38.3 | 4.3 | 2.39 | 1.4 | No | JTLQ00000000.1 | [22] | ||
Thermophis | baileyi | Illumina | 185 | 43.6 | 2,414 | 16.8 | 1.8 | 20,995 | No | QLTV00000000 | [23] | ||
Thamnophis | sirtalis | Illumina | 72 | 41.8 | 516 | 10.45 | 1.4 | Yes | LFLD00000000.1 | [87] | |||
elegans | Illumina; PacBio | 62 | 41.1 | 100,851 | 4,620 | 1.6 | 18,900 | Yes | PRJNA561996 | ||||
Elapidae | Ophiophagus | hannah | Illumina | 28 | 40.6 | 226 | 3.98 | 1.6 | Yes | AZIM00000000.1 | [18] | ||
Pseudonaja | textilis | 73 | 40.1 | 14,685 | 50.44 | 1.6 | 19,358 | Yes | ULFR00000000.1 | [84] | |||
Notechis | scutatus | Illumina; PacBio | 71 | 40.2 | 5,997 | 31.76 | 1.6 | 19,770 | Yes | PRJEB27871 | [28] | ||
Naja | naja | PacBio; Nanopore; Illumina | 250 | 40.4 | 223,350 | 303.98 | 1.79 | 23,248 | Yes | SOZL00000000.1 | [27] | ||
Hydrophis | curtus | Illumina NovaSeq | 120 | 37.2 | 1,346 | 183 | 1.62 | 21,863 | Yes | PRJNA597425 | [30] | ||
Pythonoidea | Pythonidae | Python | bivittatus | Illumina; Roche 454 | 20 | 39.7 | 214 | 10.66 | 1.4 | 19,793 | No | AEQU00000000.2 | [9] |
Booidea | Boidae | Boa | constrictor | Illumina; Roche 454; PacBio | 125 | 1.6 | No | [19] |
PB stands for PacBio and IL for Illumina.