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. 2022 Apr 1;13:1739. doi: 10.1038/s41467-022-29439-6

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© The Author(s) 2022

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 4 — a Laminar organization of mouse olfactory bulb annotated in the DAPI-stained image generated by Stereo-seq. b Spatial domains generated by Louvain clustering with resolution = 0.8 on the low-dimensional SCANPY, SEDR, and STAGATE embeddings in the Stereo-seq mouse olfactory bulb tissue section. c Laminar organization of mouse olfactory bulb annotated by the Allen Reference Atlas. d Spatial domains generated by Louvain clustering with resolution = 0.5 on the low-dimensional SCANPY, SEDR, and STAGATE embeddings in the Slide-seqV2 mouse olfactory bulb tissue section. e Visualization of spatial domains identified by STAGATE and the corresponding marker genes. Spatial domains were annotated by the laminar organization showed in the Allen Reference Atlas.