Table 1.
Quality statistics of different sample sequencing data.
| Sample | Raw data | Valid data | Valid ratio (%) | Q20 (%) | Q30 (%) | Mapped ratio (%) | ||
|---|---|---|---|---|---|---|---|---|
| Read | Base | Read | Base | |||||
| Case 1 | 100907820 | 10.09G | 97337470 | 9.73G | 96.46 | 99.65 | 93.62 | 96.75% |
| Case 3 | 100907820 | 10.14G | 97777644 | 9.78G | 96.47 | 99.77 | 94.53 | 97.22% |
| Case 5 | 111127214 | 11.11G | 107057624 | 10.71G | 96.34 | 99.73 | 94.29 | 97.03% |
| Control 2 | 127793504 | 12.78G | 123059382 | 12.31G | 96.3 | 99.72 | 93.95 | 97.00% |
| Control 4 | 129181238 | 12.92G | 124703732 | 12.47G | 96.53 | 99.79 | 95.11 | 97.42% |
| Control 6 | 111883148 | 11.19G | 107594368 | 10.76G | 96.17 | 99.57 | 93.04 | 96.47% |
Note: Case represents C. neoformans-infected THP-1 cells; control represents C. neoformans-uninfected THP-1 cells.