Table 1.
Details of mutations identified in the SARS-CoV-2 whole genome sequences submitted from Bangladesh from June 2020 to December 2021.
| Position | From | To | Type of mutation | Accession no. | Submitted on | Mutation frequency (%) |
|---|---|---|---|---|---|---|
| 205 | T | C | SM |
MT876547.1 MT876554.1 MT876599.1 MT876606.1 |
12 August 2020 12 August 2020 12 August 2020 12 August 2020 |
6.55 |
| *241 | C | T | SM | All from BD | 100 | |
| 683 | C | T | SM | MT876433.1 | 12 August 2020 | 1.63 |
| 751 | C | T | SM | MT607252.1 | 15 June 2020 | 1.63 |
| 1036 | T | C | SM | MT655744.1 | 23 June 2020 | 1.63 |
| 1148 | G | T | SM | MT876572.1 | 12 August 2020 | 1.63 |
| 1457 | C | T | SM | MT876526.1 | 12 August 2020 | 1.63 |
| 1734 | C | T | SM | MT876547.1 | 12 August 2020 | 1.63 |
| 1820 | G | A | SM |
MT657958.1 MT876547.1 |
23 June 2020 12 August 2020 |
3.27 |
| 2057 | A | G | SM | MT607252.1 | 15 June 2020 | 1.63 |
| 2110 | C | A | SM | MT876556.1 | 12 August 2020 | 1.63 |
| 2113 | C | T | SM | MT731937.1 | 08 July 2020 | 1.63 |
| 2210 | G | T | SM |
MT581414.1 MW531680.1 |
31 October 2020 27 January 2021 |
3.27 |
| 2288 | G | A | SM | MT876599.1 | 12 August 2020 | 1.63 |
| 2388 | C | T | SM |
MT731932.1 MT731933.1 MT731935.1 |
08 July 2020 08 July 2020 08 July 2020 |
4.91 |
| 2805 | A | C | SM | MT876556.1 | 12 August 2020 | 1.63 |
| 2910 | C | T | SM |
MT876555.1 MW624725.1 |
12 August 2020 18 February 2021 |
3.27 |
| *3037 | C | T | SM | All from BD | 100 | |
| 3077 | G | A | SM |
MT581419.1 MT581416.1 |
31 October 2020 | 3.27 |
| 3163 | T | C | SM | MT876556.1 | 12 August 2020 | 1.63 |
| 3234 | A | G | SM | MT657958.1 | 23 June 2020 | 1.63 |
| 3533 | T | C | SM | MT666099.1 | 25 June 2020 | 1.63 |
| 3688 | C | T | SM |
MT581419.1 MT581418.1 MT581417.1 MT581416.1 MT581415.1 |
31 October 2020 | 8.19 |
| 3754 | A | G | SM | MT666068.1 | 25 June 2020 | 1.63 |
| 3871 | G | T | SM | MT581411.1 | 31 October 2020 | 1.63 |
| 3961 | C | T | SM |
MT601275.1 MT648676.1 MT655744.1 MT655746.1 MT876432.1 MT876555.1 MT876525.1 MT876572.1 MT581413 MT581410.1 |
12 June 2020 22 June 2020 23 June 2020 23 June 2020 12 August 2020 12 August 2020 12 August 2020 12 August 2020 31 October 2020 31 October 2020 |
16.39 |
| 4024 | G | A | SM | MT876572.1 | 12 August 2020 | 1.63 |
| 4113 | C | T | SM | MT876607.1 | 12 August 2020 | 1.63 |
| 4298 | G | T | SM | MT581415.1 | 31 October 2020 | 1.63 |
| 4300 | G | T | SM | MT876525.1 | 12 August 2020 | 1.63 |
| 4444 | G | T | SM |
MT581423.1 MT581422.1 MT581420.1 |
31 October 2020 | 4.91 |
| 4503 | A | T | SM | MT664171.1 | 25 June 2020 | 1.63 |
| 4522 | G | T | SM | MT601281.1 | 12 June 2020 | 1.63 |
| 4579 | T | A | SM | MT667351.1 | 25 June 2020 | 1.63 |
| 4778 | A | G | SM | MT876598.1 | 12 August 2020 | 1.63 |
| 5037 | G | C | SM | MT876599.1 | 12 August 2020 | 1.63 |
| 5366 | A | G | SM | MT655744.1 | 23 June 2020 | 1.63 |
| 5621 | C | T | SM | MT607252.1 | 15 June 2020 | 1.63 |
| 5832 | C | T | SM | MT655744.1 | 23 June 2020 | 1.63 |
| 5950 | G | T | SM | MT876555.1 | 12 August 2020 | 1.63 |
| 6120 | C | T | SM | MT731937.1 | 08 July 2020 | 1.63 |
| 6359 | G | A | SM |
MT664106.1 MT664109.1 |
25 June 2020 25 June 2020 |
3.27 |
| 6578 | C | T | SM | MT581416.1 | 31 October 2020 | 1.63 |
| 6807 | C | T | SM | MT876547.1 | 12 August 2020 | 1.63 |
| 7113 | C | T | SM | MT876527.1 | 12 August 2020 | 1.63 |
| 7528 | C | T | SM | MT581419.1 | 31 October 2020 | 1.63 |
| 8026 | A | G | SM | MT731937.1 | 08 July 2020 | 1.63 |
| 8127 | C | T | SM | MT664171.1 | 25 June 2020 | 1.63 |
| 8156 | T | G | SM | MT876599.1 | 12 August 2020 | 1.63 |
| 8327 | C | T | SM | MT666099.1 | 25 June 2020 | 1.63 |
| 8371 | G | T | SM |
MT581423.1 MT581422.1 MT581420.1 |
31 October 2020 | 4.91 |
| 9050 | C | T | SM | MT731936.1 | 08 July 2020 | 1.63 |
| 9223 | C | T | SM | MT657271.1 | 23 June 2020 | 1.63 |
| 9246 | C | T | SM | MT655744.1 | 23 June 2020 | 1.63 |
| 9502 | C | T | SM | MT731937.1 | 08 July 2020 | 1.63 |
| 9532 | C | T | SM | MT876556.1 | 12 August 2020 | 1.63 |
| 9565 | C | T | SM | MT666099.1 | 25 June 2020 | 1.63 |
| 9828 | A | G | SM | MT731936.1 | 08 July 2020 | 1.63 |
| 10,198 | C | T | SM | MT731935.1 | 08 July 2020 | 1.63 |
| 10,252 | C | T | SM |
MT731932.1 MT581413 |
08 July 2020 31 October 2020 |
3.27 |
| 10,323 | A | G | SM | MT876606.1 | 12 August 2020 | 1.63 |
| 10,834 | C | T | SM | MT876525.1 | 12 August 2020 | 1.63 |
| 10,870 | G | T | SM | MT876571.1 | 12 August 2020 | 1.63 |
| 11,036 | C | A | SM | MT876555.1 | 12 August 2020 | 1.63 |
| 11,042 | G | T | SM | MT876554.1 | 12 August 2020 | 1.63 |
| 11,083 | G | T | SM | MT731937.1 | 08 July 2020 | 1.63 |
| 11,719 | G | A | SM | MT876526.1 | 12 August 2020 | 1.63 |
| 11,761 | G | T | SM | MT667351.1 | 25 June 2020 | 1.63 |
| 11,824 | C | T | SM | MT876599.1 | 12 August 2020 | 1.63 |
| 12,061 | A | G | SM | MT876527.1 | 12 August 2020 | 1.63 |
| 12,070 | G | T | SM | MT876607.1 | 12 August 2020 | 1.63 |
| 12,085 | C | T | SM | MT731937.1 | 08 July 2020 | 1.63 |
| 12,357 | C | T | SM | MT664107.1 | 25 June 2020 | 1.63 |
| 12,672 | C | T | SM | MT648676.1 | 22 June 2020 | 1.63 |
| 12,936 | A | C | SM | MT876547.1 | 12 August 2020 | 1.63 |
| 13,201 | G | T | SM | MT664107.1 | 25 June 2020 | 1.63 |
| 13,348 | G | T | SM | MT601281.1 | 12 June 2020 | 1.63 |
| 13,812 | G | T | SM | MT731932.1 | 08 July 2020 | 1.63 |
| 13,920 | G | A | SM | MT876525.1 | 12 August 2020 | 1.63 |
| 14,110 | C | A | SM | MT655744.1 | 23 June 2020 | 1.63 |
| *14408 | C | T | SM | All from BD | 100 | |
| 14,645 | C | T | SM |
MT581410.1 MW624725.1 |
31 October 2020 18 February 2021 |
3.27 |
| 15,324 | C | T | SM |
MT581419.1 MT581418.1 MT581417.1 MT581416.1 MT581415.1 |
31 October 2020 | 8.19 |
| 15,540 | C | T | SM | MT581413 | 31 October 2020 | 1.63 |
| 15,543 | G | T | SM | MT876554.1 | 12 August 2020 | 1.63 |
| 15,714 | C | T | SM | MT601281.1 | 12 June 2020 | 1.63 |
| 15,738 | C | T | SM | MT876546.1 | 12 August 2020 | 1.63 |
| 15,960 | C | T | SM | MT731937.1 | 08 July 2020 | 1.63 |
| 15,982 | G | T | SM | MT876525.1 | 12 August 2020 | 1.63 |
| 16,596 | C | T | SM | MT876607.1 | 12 August 2020 | 1.63 |
| 16,830 | C | T | SM | MT731934.1 | 08 July 2020 | 1.63 |
| 16,939 | T | C | SM | MT731936.1 | 08 July 2020 | 1.63 |
| 17,259 | G | T | SM | MT667351.1 | 25 June 2020 | 1.63 |
| 17,427 | G | T | SM | MT664171.1 | 25 June 2020 | 1.63 |
| 17,678 | C | T | SM | MT876554.1 | 12 August 2020 | 1.63 |
| 18,105 | G | T | SM | MT664106.1 | 25 June 2020 | 1.63 |
| 18,131 | C | T | SM | MT876607.1 | 12 August 2020 | 1.63 |
| 18,457 | C | T | SM | MT876607.1 | 12 August 2020 | 1.63 |
| 18,735 | A | G | SM | MT601275.1 | 12 June 2020 | 1.63 |
| 18,877 | C | T | SM |
MT601281.1 MT664107.1 |
12 June 2020 25 June 2020 |
3.27 |
| 19,162 | G | T | SM | MT581419.1 | 31 October 2020 | 1.63 |
| 19,273 | C | T | SM | MT655948.1 | 23 June 2020 | 1.63 |
| 19,398 | G | A | SM | MT655750.1 | 23 June 2020 | 1.63 |
| 19,723 | G | T | SM | MT731932.1 | 08 July 2020 | 1.63 |
| 20,436 | C | T | SM | MT655744.1 | 23 June 2020 | 1.63 |
| 20,480 | C | T | SM | MT655746.1 | 23 June 2020 | 1.63 |
| 20,628 | C | T | SM | MT731936.1 | 08 July 2020 | 1.63 |
| 20,679 | G | T | SM | MT876548.1 | 12 August 2020 | 1.63 |
| 20,774 | G | A | SM | MT581412 | 31 October 2020 | 1.63 |
| 20,893 | G | T | SM | MT664107.1 | 25 June 2020 | 1.63 |
| 20,955 | T | C | SM | MT876571.1 | 12 August 2020 | 1.63 |
| 21,204 | G | T | SM | MT655746.1 | 23 June 2020 | 1.63 |
| 21,216 | C | T | SM | MT876554.1 | 12 August 2020 | 1.63 |
| 21,306 | C | T | SM | MT655746.1 | 23 June 2020 | 1.63 |
| 21,595 | C | T | SM | MT876431.1 | 12 August 2020 | 1.63 |
| 21,639 | C | T | SM | MT655746.1 | 23 June 2020 | 1.63 |
| 21,707 | C | T | SM | MT876546.1 | 12 August 2020 | 1.63 |
| 21,855 | C | T | SM | MT876555.1 | 12 August 2020 | 1.63 |
| 21,941 | G | T | SM | MT655745.1 | 23 June 2020 | 1.63 |
| 21,998 | C | T | SM |
MT876606.1 MW624725.1 |
12 August 2020 18 February 2020 |
3.27 |
| 22,199 | G | T | SM | MT581413 | 31 October 2020 | 1.63 |
| 22,343 | G | C | SM | MT655742.1 | 23 June 2020 | 1.63 |
| 22,444 | C | T | SM |
MT655742.1 MT664107.1 |
23 June 2020 25 June 2020 |
3.27 |
| 22,501 | T | C | SM | MT876598.1 | 12 August 2020 | 1.63 |
| 23,029 | C | T | SM |
MT664106.1 MT664109.1 |
25 June 2020 25 June 2020 |
3.27 |
| 23,095 | A | G | SM |
MT664105.1 MT664175.1 |
25 June 2020 25 June 2020 |
3.27 |
| 23,101 | T | G | SM | MT648676.1 | 22 June 2020 | 1.63 |
| 23,202 | C | T | SM | MT581410.1 | 31 October 2020 | 1.63 |
| 23,230 | C | T | SM | MT581418.1 | 31 October 2020 | 1.63 |
| 23,268 | T | G | SM | MT581418.1 | 31 October 2020 | 1.63 |
| *23402 | A | G | SM | All from BD except MT664107.1 | October 2020 | 98.36 |
| *23403 | A | G | SM | All sequences | October 2020 | 100 |
| 23,952 | T | G | SM | MT581419.1 | 31 October 2020 | 1.63 |
| 23,586 | A | G | SM | MT731933.1 | 08 July 2020 | 1.63 |
| 23,587 | G | T | SM | MT648676.1 | 22 June 2020 | 1.63 |
| 23,599 | T | G | SM | MT876571.1 | 12 August 2020 | 1.63 |
| 23,608 | G | T | SM | MT657271.1 | 23 June 2020 | 1.63 |
| 23,934 | C | T | SM | MT655745.1 | 23 June 2020 | 1.63 |
| 23,957 | G | A | SM | MT581419.1 | 31 October 2020 | 1.63 |
| 24,181 | C | T | SM | MT876555.1 | 12 August 2020 | 1.63 |
| 24,383 | A | G | SM | MT876607.1 | 12 August 2020 | 1.63 |
| 25,494 | G | T | SM | MT601281.1 | 12 June 2020 | 1.63 |
| 25,563 | G | T | SM | MT601281.1 | 12 June 2020 | 1.63 |
| 25,597 | T | C | SM | MT655750.1 | 23 June 2020 | 1.63 |
| 25,615 | A | G | SM | MT657271.1 | 23 June 2020 | 1.63 |
| 25,644 | G | T | SM | MT731935.1 | 8 July 2020 | 1.63 |
| 25,713 | T | C | SM | MT876548.1 | 12 August 2020 | 1.63 |
| 25,883 | G | T | SM | MT876554.1 | 12 August 2020 | 1.63 |
| 25,906 | G | T | SM |
MT581423.1 MT581422.1 |
31 October 2020 | 3.27 |
| 26,058 | C | T | SM | MT876556.1 | 12 August 2020 | 1.63 |
| 26,302 | T | C | SM | MT666099.1 | 25 June 2020 | 1.63 |
| 26,735 | C | T | SM |
MT601281.1 MT664107.1 |
12 June 2020 25 June 2020 |
1.63 |
| 26,895 | C | T | SM | MT731937.1 | 08 July 2020 | 1.63 |
| 27,199 | C | T | SM | MT876606.1 | 12 August 2020 | 1.63 |
| 27,316 | A | T | SM | MT601281.1 | 12 June 2020 | 1.63 |
| 27,389 | C | T | SM | MT664109.1 | 25 June 2020 | 1.63 |
| 27,518–19 | GC | TT | NSM | MT666099.1 | 25 June 2020 | 1.63 |
| 27,675 | A | C | SM | MT876554.1 | 12 August 2020 | 1.63 |
| 27,944 | C | T | SM | MT607252.1 | 15 June 2020 | 1.63 |
| 27,945 | C | G | SM | MT581414.1 | 31 October 2020 | 1.63 |
| 28,008 | A | G | SM | MT876599.1 | 12 August 2020 | 1.63 |
| 28,085 | G | A | SM | MT655742.1 | 23 June 2020 | 1.63 |
| 28,115 | C | T | SM | MT664107.1 | 25 June 2020 | 1.63 |
| 28,304 | A | G | SM | MT876556.1 | 12 August 2020 | 1.63 |
| 28,321 | G | T | SM | MT601281.1 | 12 June 2020 | 1.63 |
| 28,435 | C | T | SM | MT731937.1 | 08 July 2020 | 1.63 |
| 28,521 | A | G | SM | MT667351.1 | 25 June 2020 | 1.63 |
| 28,687 | C | T | SM | MT581411.1 | 31 October 2020 | 1.63 |
| 28,690 | G | A | SM | MT601287.1 | 12 June 2020 | 1.63 |
| 28,831 | C | T | SM | MT876571.1 | 12 August 2020 | 1.63 |
| 28,854 | C | T | SM |
MT601281.1 MT664107.1 |
12 June 2020 25 June 2020 |
3.27 |
| **28,881–83 | GGG | AAG | NSM | All except for Ref seq, MT601281.1 and MT664107.1 Sequences submitted in 2021 |
96.72 | |
| 28,888 | T | C | SM | MT876546.1 | 12 August 2020 | 1.63 |
| 28,893 | C | T | SM | MT581415.1 | 31 October 2020 | 1.63 |
| 28,903 | G | T | SM | MT581415.1 | 31 October 2020 | 1.63 |
| 28,960 | G | T | SM | MT731935.1 | 8 July 2020 | 1.63 |
| 29,081 | G | T | SM | MT664107.1 | 25 June 2020 | 1.63 |
| 29,085 | C | T | SM | MT664107.1 | 25 June 2020 | 1.63 |
| 29,218 | C | T | SM | MT655744.1 | 23 June 2020 | 1.63 |
| 29,260 | G | T | SM | MT657958.1 | 23 June 2020 | 1.63 |
| 29,296 | C | T | SM | MT876554.1 | 12 August 2020 | 1.63 |
| 29,403 | A | G | SM |
MT581423.1 MT581422.1 MT581420.1 |
31 October 2020 | 4.91 |
| 29,431 | G | T | SM | MT601281.1 | 12 June 2020 | 1.63 |
| 29,614 | C | T | SM | MT664107.1 | 25 June 2020 | 1.63 |
| 29,661 | T | C | SM | MT876555.1 | 12 August 2020 | 1.63 |
| 29,666 | C | T | SM | MT876527.1 | 12 August 2020 | 1.63 |
| 29,688 | G | T | SM | MT876571.1 | 12 August 2020 | 1.63 |
| 29,736 | G | T | SM | MT657958.1 | 23 June 2020 | 1.63 |
| 29,741 | C | T | SM |
MT876547.1 MT581414.1 |
12 August 2020 31 October 2020 |
3.27 |
| 29,447 | G | T | SM | MT655742.1 | 23 June 2020 | 1.63 |
| 29,753 | T | C | SM | MT876546.1 | 12 August 2020 | 1.63 |
| 29,785 | T | C | SM | MT648676.1 | 22 June 2020 | 1.63 |
Here, SM = Synonymous Mutation; NSM = Non-synonymous Mutation. * showing the nucleotide positions of commonly found SNPs whereas ** showing commonly found triple base (block) mutations.