Skip to main content
. 2022 Mar 21;13:794139. doi: 10.3389/fphar.2022.794139

TABLE 3.

Binding affinity of key chemical compounds of R-6 to putative targets.

Drug Key chemical constituents TNFR1 TNF SERPINE1 MMP9 INS IL6 IL10 ICAM1 HGF FN1 EDN1 APOE IL1B CCL2 LEP
Alismatis Rhizoma alisol a −4.73 −2.85 −5.93 −4.51 −5.04 −5.75 −6.2 −3.77 −5.21 −5.24 −5.87 −3.35 −6.12 −3.98 −5.26
alisol b −5.26 −4.44 −4.65 −5.93 −6.01 −7.05 −6.77 −3.82 −5.89 −6.02 −5.13 −3.42 −6.97 −4.55 −7.71
alisol c −6.28 −3.22 −7.97 −3.29 −7.61 −7.1 −6.29 −3.61 −6.04 −4.78 −5.62 −2.89 −7.47 −5.4 −6.37
Corni Fructus 3,6-digalloylglucose 1.98 2.44 2.13 2.57 -2.51 -0.83 4.77 0.05 0.52 0.54 1.69 2.28 2.73 1.51 −2.34
7,8-dehydropenstemoside −1.99 −0.56 −1.12 −2.32 −1.68 −2.18 −1.6 −0.14 −2.07 −1.42 −3.73 0.06 −1.65 −1.89 −4.69
7-O-methyl morroniside −2.93 −2.63 −1.89 −3.87 −3.67 −4.05 −2.15 −1.28 −3.33 −3.81 −4.08 −2.01 −1.95 −2.05 −4.02
Dioscoreae Rhizoma campesterol −6.47 -4.04 −5.85 −5.76 −6.48 −6.84 −6.03 −5.32 −6.53 −2.01 −6.05 −4.29 −5.74 −5.08 −6.19
deltoside −4.3 −2.97 −4.5 −4.79 −4.58 −5.28 −3.83 −3.07 −3.76 −4.41 −5.23 −3.97 −3.8 −3.53 −5.15
dioscin −1.25 1.07 −1.29 −4.37 −3.74 -4.03 −4.27 −1.49 −4.73 −2.89 −3.95 4.47 −1.71 −2.25 −3.53
Moutan Cortex benzoylpaeoniflorin −2.84 −0.6 −1.2 −0.39 −5.41 −3.45 0.36 0.29 −2.62 −2.16 −1.47 1.37 0.59 −1.76 −3.85
paeoniflorin −1.12 −0.08 −3.63 −0.94 −4.06 −4.53 −1.63 −0.82 −2.52 −4.01 −3.76 −0.79 −4.7 −2.39 −2.83
suffruticoside a −0.86 0.15 −2.79 −2.4 −3.67 −3.46 −0.34 −0.87 −2.01 −2.7 −3.13 −0.24 −0.31 −0.55 −2.32
Poria 20-hexadecanoylingenol 1.65 −1.12 −0.78 −1.77 −3.68 −1.41 −3.41 1.59 −5.72 −1.98 −3.53 1.49 −3.98 −1.63 −3.75
adenine −3.08 −2.46 −4.23 −3.14 −3.8 −4.46 −3.65 −2.61 −3.47 −4.34 −4.92 −3.75 −4.23 −3.16 −4.49
beta-amyrin acetate −6.9 −6.22 −6.89 −5.76 −7.77 −7.42 −8.49 −6.29 −7.71 −6.91 −6.95 −6.5 −8.34 −7.34 −8.44
p-hydroxybenzyl alcohol −3.51 −3.12 −3.38 −4.4 −3.84 −3.66 −3.01 −3.16 −3.62 −3.39 −3.45 −2.16 −3.73 −3.15 −4.09
Rehmanniae Radix acteoside 5.97 5.97 0.24 1.65 0.22 −0.9 −1.53 5.96 1.94 3.07 0.57 5.97 0.37 3.89 0.64
catalpol 0.04 −0.25 −2.49 −1.89 −1.18 −2.77 −1.28 −0.79 −2.74 −1.62 −1.92 −0.25 −3.1 −1.91 −1.99

Free energy of binding (in Kcal/mol) were obtained from AutoDock Vina as the indicator of the binding likelihood. Negative values of free energy indicate possible binding in simulation. More negative scoring indicates stronger binding affinity. ACE, CRP, PTGS, and TNF receptor 2 were not assessable due to the large crystal structure.