Table 3.
Mean and standard deviation (
) of
estimates of 
for a single population (true
value is 0.01) from a sample of 
sequences using
bpp with different strategies of phase resolution and two summary
methods
| Method |
|
|
|
|
|
|---|---|---|---|---|---|
| bpp (F) | 10.06  1.02 |
10.06  0.61 |
10.03  0.52 |
9.96  0.36 |
10.03  0.34 |
| bpp (D) | 10.06  1.02 |
10.05  0.62 |
10.17  0.53 |
10.50  0.43 |
11.19  0.47 |
| bpp (P) | 10.06  1.02 |
9.80  0.61 |
9.84  0.51 |
9.94  0.37 |
10.05  0.34 |
| bpp (R) | 10.06  1.02 |
12.86  0.91 |
18.13 1.32 |
26.43  1.65 |
41.27  3.22 |
Watterson ( ) |
9.94  1.01 |
9.92  0.61 |
9.85  0.55 |
9.76  0.40 |
9.82  0.36 |
Pairwise distance ( ) |
9.94  1.01 |
9.94  0.63 |
9.87  0.63 |
9.78  0.50 |
9.93  0.55 |
Pairwise distance( ) |
10.01  1.03 |
10.01  0.64 |
9.94  0.64 |
9.84  0.50 |
9.99  0.56 |
Note: Watterson’s estimate (
) and the average
pairwise distance (
) do not depend on
phase resolutions. JC correction is applied in calculation of
.