Table 5.

(MSci test, shallow) Power of the Bayesian test for introgression (measured by the proportion of replicates in which the lower limit of the 95% HPD CI for is ) when the true model is the Shallow MSci tree

	low					high
	10L	20L	50L	100L		10L	20L	50L	100L
= 0.1
seqs per species
F	0.42	0.41	0.42	0.49		0.48	0.52	0.64	0.89
D	0.48	0.40	0.45	0.46		0.38	0.35	0.61	0.80
P	0.49	0.45	0.49	0.49		0.55	0.60	0.83	0.99
R	0.51	0.44	0.47	0.48		0.27	0.25	0.40	0.57
seqs per species
F	0.58	0.47	0.55	0.58		0.59	0.71	0.98	0.99
D	0.56	0.44	0.54	0.60		0.56	0.66	0.94	0.99
P	0.57	0.43	0.44	0.49		0.60	0.65	0.94	1.00
R	0.56	0.45	0.50	0.57		0.44	0.46	0.71	0.81
seqs per species
F	0.68	0.74	0.87	0.94		0.86	0.97	1.00	1.00
D	0.64	0.81	0.89	0.93		0.84	0.91	1.00	1.00
P	0.68	0.78	0.85	0.89		0.86	0.94	0.99	1.00
R	0.66	0.72	0.87	0.92		0.74	0.82	0.96	0.99
seqs per species
F	0.79	0.88	0.97	1.00		0.95	1.00	1.00	1.00
D	0.83	0.86	0.95	1.00		0.92	0.99	1.00	1.00
P	0.84	0.84	0.95	1.00		0.94	0.97	1.00	1.00
R	0.84	0.82	0.94	0.99		0.75	0.89	1.00	1.00

Note: Results for the Deep MSci model are in Supplementary Table S19 available on Dryad.