Table 6.
Posterior means and 95% HPD CIs for parameters under the MSC model for the east Asian brown frogs and for the chipmunks
| Diploid (D) | PHASE (P) | Random (R) | Ambiguity coding (A) | |
|---|---|---|---|---|
| (a) East Asian brown frogs (Fig. 3a) | ||||
|
4.94 (2.62, 7.65) | 6.35 (3.32, 9.80) | 6.81 (3.64, 10.48) | 2.78 (1.06, 4.99) |
|
20.57 (11.78, 30.66) | 22.84 (12.98, 34.29) | 32.00 (18.11, 48.37) | 5.65 (2.41, 9.71) |
|
10.82 (6.32, 15.94) | 10.12 (5.98, 14.76) | 12.33 (7.45, 17.79) | 6.73 (2.37, 12.29) |
|
3.73 (1.42, 6.73) | 3.35 (1.29, 5.96) | 5.39 (1.83, 10.16) | 1.18 (0.29, 2.51) |
|
5.13 (2.20, 8.43) | 5.49 (2.54, 8.82) | 4.41 (1.50, 7.49) | 4.56 (1.74, 7.84) |
|
2.21 (0.21, 6.53) | 2.00 (0.20, 5.76) | 2.65 (0.22, 7.87) | 1.85 (0.21, 5.32) |
|
1.72 (0.20, 4.61) | 1.43 (0.21, 3.62) | 1.54 (0.23, 3.94) | 1.28 (0.19, 3.15) |
|
2.14 (1.57, 2.73) | 2.00 (1.50, 2.53) | 2.49 (1.89, 3.17) | 1.37 (0.86, 1.93) |
|
2.03 (1.53, 2.54) | 1.91 (1.45, 2.38) | 2.30 (1.79, 2.83) | 1.23 (0.78, 1.70) |
|
1.85 (1.28, 2.44) | 1.77 (1.27, 2.27) | 2.15 (1.60, 2.72) | 1.11 (0.65, 1.61) |
| (b) Rocky Mountains chipmunks (Fig. 3b) | ||||
|
0.81 (0.70, 0.93) | 0.83 (0.72, 0.94) | 0.93 (0.81, 1.05) | 0.39 (0.31, 0.47) |
|
0.78 (0.67, 0.89) | 0.81 (0.69, 0.91) | 0.94 (0.81, 1.07) | 0.26 (0.21, 0.32) |
|
0.36 (0.30, 0.41) | 0.36 (0.30, 0.41) | 0.37 (0.31, 0.42) | 0.32 (0.25, 0.39) |
|
0.47 (0.38, 0.55) | 0.47 (0.39, 0.55) | 0.50 (0.42, 0.58) | 0.48 (0.39, 0.56) |
|
1.79 (1.61, 1.98) | 1.79 (1.60, 1.97) | 2.05 (1.84, 2.26) | 0.67 (0.57, 0.77) |
|
1.04 (0.93, 1.15) | 1.04 (0.93, 1.15) | 1.06 (0.95, 1.17) | 0.83 (0.73, 0.94) |
|
0.79 (0.67, 0.90) | 0.79 (0.67, 0.90) | 0.84 (0.71, 0.96) | 0.34 (0.25, 0.43) |
|
9.94 (8.31,11.54) | 10.03 (8.61,11.45) | 9.95 (8.32,11.55) | 10.05 (8.62,11.43) |
|
1.24 (1.02, 1.47) | 1.24 (1.02, 1.45) | 1.24 (1.01, 1.46) | 1.24 (1.01, 1.46) |
|
1.01 (0.65, 1.39) | 1.06 (0.68, 1.44) | 0.99 (0.64, 1.34) | 1.06 (0.63, 1.50) |
|
4.33 (0.33, 9.43) | 5.13 (0.77,10.38) | 2.87 (0.35, 5.87) | 2.08 (0.20, 5.90) |
|
2.43 (0.50, 4.62) | 1.84 (0.34, 3.68) | 2.16 (0.57, 3.74) | 2.45 (0.69, 4.38) |
|
0.51 (0.21, 0.86) | 0.54 (0.19, 0.91) | 0.49 (0.21, 0.80) | 0.90 (0.34, 1.54) |
|
3.83 (3.30, 4.50) | 3.80 (3.30, 4.24) | 3.85 (3.30, 4.48) | 3.70 (3.19, 4.23) |
|
1.04 (0.95, 1.14) | 1.04 (0.95, 1.13) | 1.04 (0.95, 1.13) | 0.92 (0.82, 1.01) |
|
0.74 (0.67, 0.81) | 0.72 (0.65, 0.79) | 0.75 (0.68, 0.81) | 0.59 (0.52, 0.67) |
|
0.58 (0.45, 0.71) | 0.52 (0.42, 0.63) | 0.60 (0.49, 0.71) | 0.55 (0.44, 0.64) |
|
0.41 (0.35, 0.46) | 0.41 (0.35, 0.46) | 0.43 (0.38, 0.49) | 0.34 (0.26, 0.43) |
|
0.33 (0.29, 0.38) | 0.34 (0.29, 0.37) | 0.37 (0.33, 0.41) | 0.21 (0.16, 0.26) |
Note: All values are multiplied by 1000.