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. 2021 Jul 10;71(2):367–381. doi: 10.1093/sysbio/syab056

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© The Author(s) 2021. Published by Oxford University Press on behalf of the Society of Systematic Biologists.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 6. — Species tree estimation error for data simulated from the 16-taxon fungal tree with a population size of and varying GDL rates; note that simulations include the effects of GDL and gene tree estimation error (no ILS). Species tree estimation error was measured as the normalized RF distance between the true species tree and the ones inferred from estimated locus trees. The five inference methods used are ASTRAL, , NJ, ASTRAL-Pro (“A-pro”), and FastMulRFS. The duplication/loss rates are denoted by the rate multiplier (0, 1, 2, 5, and 10), where 1 is the rate estimated in nature for fungi. Each row corresponds to a combination of population size and GDL rates. The X-axis in each panel represents the number of gene families used and the Y-axis represents the normalized RF distance.

Inline graphic — Species tree estimation error for data simulated from the 16-taxon fungal tree with a population size of and varying GDL rates; note that simulations include the effects of GDL and gene tree estimation error (no ILS). Species tree estimation error was measured as the normalized RF distance between the true species tree and the ones inferred from estimated locus trees. The five inference methods used are ASTRAL, , NJ, ASTRAL-Pro (“A-pro”), and FastMulRFS. The duplication/loss rates are denoted by the rate multiplier (0, 1, 2, 5, and 10), where 1 is the rate estimated in nature for fungi. Each row corresponds to a combination of population size and GDL rates. The X-axis in each panel represents the number of gene families used and the Y-axis represents the normalized RF distance.