Appendix 3—figure 4. Effect of sample size on QTL inference.

Left: Number of inferred QTL. Dashed line represents the number of QTL in the true model (150). Center: Model performance ($R^2$ on a test set of individuals) as a fraction of heritability $H^2$. Dashed line represents $R^2/H^2=1$, meaning all of the genetic variance is explained by the model. Right: Model similarity score (see Section A3-2.3) between the true and inferred models. Dashed line represents perfect recovery of the true model.