Structure of Scheme 1 compounds with their elemental property, docking score, MM-GBSA binding energy and enzyme-based inhibition activity. The biological evaluation of enzyme-based inhibitory activity of test compounds at 10.0 μm concentration was obtained against recombinant human Sirt1, n = 3, and the results were represented as the mean of three independent experimentsa.
Comp. | R | R1 | R2/R3 | Mol. mass | Static docking Sirt1 (kcal mol−1) | IF guided docking Sirt1 | % inhibition at 10 μM Sirt1 | |
---|---|---|---|---|---|---|---|---|
Dock score (kcal mol−1) | ΔGbind (kcal mol−1) | |||||||
7a | –OMe | –H | 421 | −9.23 | −6.26 | −58.96 | 88.03 | |
7b | –OMe | –H | 450 | −7.98 | −7.06 | −59.49 | 88.18 | |
7c | –OMe | –H | 464 | −9.15 | −6.68 | −58.85 | 86.34 | |
7d | –OMe | –H | 537 | −8.81 | −6.70 | −72.08 | 89.99 | |
7e | –F | –H | 409 | −11.47 | −6.51 | −54.45 | <30 | |
7f | –F | –H | 437 | −9.32 | −7.40 | −54.66 | <30 | |
7g | –F | –H | 451 | −8.76 | −6.08 | −58.20 | 80.82 | |
7h | –F | –H | 525 | −8.67 | −5.84 | −61.60 | 86.83 | |
7i | –H | –Cl/F | 472 | −10.70 | −7.08 | −49.04 | <30 | |
7j | –H | –Cl/F | 486 | −9.71 | −5.33 | −33.49 | <30 | |
7k | –H | –Cl/F | 559 | −8.49 | −5.61 | −52.97 | <30 | |
7l | –H | –Cl/F | 559 | −8.12 | −6.61 | −56.97 | <30 | |
Control | Ex527 | −7.78 | −63.58 | 97.73 |
The italicized rows represent the ligands chosen for further studies.