. Author manuscript; available in PMC: 2022 Oct 1.

Published in final edited form as: J Immunol. 2022 Mar 18;208(7):1813–1827. doi: 10.4049/jimmunol.2100700

Table I:

Summary of datasets used, materials used, and accession information

Dataset	Materials used	Accession
TESLA Consortium (16)	Raw RNAseq and WES data	https://www.synapse.org/#!Synapse:syn21048999/wiki/603788
TESLA Consortium (16)	Lists of validated neoantigens and the T cell response	Supplementary Table S4
Cohen (35)	Raw RNAseq data	https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP062169
Cohen (35)	Lists of validated neoantigens and the T cell response	Supplementary Table 2
Strønen (36)	Lists of validated neoantigens and the T cell response	Supplementary Table S8
Carreno (7)	Lists of validated neoantigens and the T cell response	Supplementary Tables S1-S3
Ott (11)	Lists of validated neoantigens and the T cell response	Supplementary Table 4
Van Allen (21)	Raw RNAseq and WES data	dbGaP accession number (phs000452.v3.p1) https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000452.v3.p1
Liu (29)	Raw RNAseq and WES data
Rizvi (25)	Raw WES data	dbGaP accession number (phs000980.v1.p1) https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000980.v1.p1