Table 1.
Physicochemical, sequence comparision and biological assembly information of PBPs present in the protein data bank (PDB). CB means Cyanobacteria, RA means Red algae. In bold are show the structure used for the sequence and RMSD analysis.
| Phycobiliprotein | Specie | Subunit | Residues | Molecular Mass (Da) | Isoelectric Point | % Sequence Identity/amino acids similarity | RMSD (Å) | Biological assembly | PDB code |
|---|---|---|---|---|---|---|---|---|---|
| Phyco erythrin | Gloeobacter Violaceus (CB) | α | 164 | 17658.04 | 6.73 | 23,7/52,5 | 2, 18 | (αβ)6 | 2VJH |
| β | 177 | 18427.16 | 7.52 | ||||||
| Phormidium rubidum A09DM (CB) | α | 164 | 17643.87 | 5.84 | 25/44,5 | 2,06 | (αβ)6 | 5NB4, 5NB3, 5AQD, 5FVB | |
| β | 184 | 19336.16 | 6.57 | ||||||
| Agarophyton chilense (RA) | α | 164 | 17751.88 | 5.42 | 27/48,6 | 2, 13 | (αβ)6 | 1EYX | |
| β | 177 | 18604.18 | 5.15 | ||||||
| Griffithsia monilis (RA) | α | 164 | 17668.86 | 5.69 | 24,5/46,8 | 2, 13 | (αβ)6 | 1B8D | |
| β | 177 | 18481.94 | 5.10 | ||||||
| Palmaria palmata (RA) | α | 164 | 17638.79 | 5.40 | 24,6/47,6 | 2, 14 | (αβ)6 | 5B13 | |
| β | 177 | 18408.00 | 5.42 | ||||||
| Polysiphonia urceolata (RA) | α | 164 | 17836.07 | 5.70 | 25/50,5 | 2, 14 | (αβ)6 | 1LIA, 1F99 | |
| β | 177 | 18721.38 | 5.15 | ||||||
| Porphyridium cruentum (RA) | α | 164 | 17805.05 | 5.42 | 27,2/51,1 | 2, 12 | (αβ)3 | 3 V57, 3 V58 | |
| β | 177 | 18554.18 | 5.43 | ||||||
| Phyco Erythro cyanin | Mastigocladus laminosus (CB) | α | 162 | 17563.74 | 6.82 | 27,5/44,4 | 2,00 | (αβ)3 | 2C7L, 2C7K, 2C7J |
| β | 172 | 18486.95 | 6.72 | ||||||
| Phyco cyanin | Acaryochloris marina (CB) | α | 162 | 17375.43 | 5.28 | 26,9/52,6 | 2,01 | (αβ)3 | 5OOK |
| β | 172 | 18022.41 | 4.94 | ||||||
| Cyanidium caldarium (CB) | α | 162 | 17505.66 | 5.81 | 27,6/54 | 1,91 | (αβ)6 | 1PHN | |
| β | 172 | 18252.74 | 4.96 | ||||||
| Gloeobacter Violaceus (CB) | α | 162 | 17662.90 | 7.74 | 23,7/53,2 | 2,03 | (αβ)6 | 2VML, 2VJR | |
| β | 172 | 18459.99 | 5.46 | ||||||
| Leptolyngbya sp (CB) | α | 162 | 17585.87 | 5.83 | 24,6/45 | 1,78 | (αβ)6 | 4L1E, 2UUN | |
| β | 172 | 18066.54 | 4.80 | ||||||
| Microchaete diplosiphon (CB) | α | 162 | 17228.34 | 6.56 | 24,6/52,6 | 1,66 | (αβ)6 | 1CPC | |
| β | 172 | 17920.38 | 5.10 | ||||||
| Phormidium rubidum A09DM (CB) | α | 162 | 17308.34 | 4.64 | 24,7/52,2 | 1,88 | (αβ)6 | 6XWK, 2UUL | |
| β | 172 | 18124.49 | 5.35 | ||||||
| Pseudanabaena sp (CB) | α | 162 | 17222.29 | 5.79 | 22,9/51,4 | 1,82 | (αβ)6 | 5TOU | |
| β | 172 | 17842.27 | 5.40 | ||||||
| Arthrospira platensis (CB) | α | 162 | 17601.87 | 5.83 | 25,7/45,5 | 1,82 | (αβ)6 | 1HA7,1GH0, 2UUM | |
| β | 172 | 18093.57 | 4.96 | ||||||
| Synechococcus elongatus (CB) | α | 162 | 17442.70 | 5.36 | 27/52,3 | 1,77 | (αβ)6 | 3L0F, 4ZIZ, 4Q70, 5MJP, 5MJM, 5O7M, 4Z8K, 5MJQ, 5UVK, 4H0M, 1JBO | |
| β | 172 | 18186.67 | 5.12 | ||||||
| Synechocystis sp. PCC 6803 (CB) | α | 162 | 17586.60 | 5.35 | 26,9/49,7 | 2,07 | (αβ)3 | 4F0T | |
| β | 172 | 18126.47 | 4.98 | ||||||
| Thermo synechococcus vulcanus (CB) | α | 162 | 17456.72 | 5.36 | 26,4/52,3 | 1,74 | (αβ)3 | 3O18, 3O2C, 1KTP, 4N6S, 4GY3, 1I7Y, 1ON7, 4GXE | |
| β | 172 | 18186.67 | 5.12 | ||||||
| Agarophyton chilense (RA) | α | 162 | 17576.64 | 5.15 | 25,4/53,7 | 1,90 | (αβ)6 | 2BV8 | |
| β | 172 | 18162.25 | 4.65 | ||||||
| Galdieria Sulphuraria (RA) | α | 162 | 17506.65 | 6.57 | 27,6/54 | 1,84 | (αβ)6 | 3KVS | |
| β | 172 | 18224.69 | 4.96 | ||||||
| Polysiphonia urceolata (RA) | α | 162 | 17569.78 | 5.81 | 27,5/56,7 | 1,85 | (αβ)6 | 1F99 | |
| β | 172 | 18000.54 | 4.92 | ||||||
| Allophycocyanin | Arthrospira platensis (CB) | α | 161 | 17220.67 | 5.07 | 37/64,2 | 1,48 | (αβ)3 | 1ALL |
| β | 161 | 17243.70 | 7.67 | ||||||
| Phormidium rubidum A09DM (CB) | α | 161 | 17475.92 | 4.85 | 34,6/62,3 | 1,53 | (αβ)3 | 4RMP | |
| β | 161 | 17408.82 | 5.15 | ||||||
| Gloeobacter Violaceus (CB) | α | 161 | 17522.09 | 4.92 | 38,3/66 | 1,41 | (αβ)3 | 2VJT | |
| β | 161 | 17211.69 | 6.24 | ||||||
| Synechocystis sp. PCC 6803 (CB) | αB | 161 | 17923.45 | 5.44 | 33,7/60,7 | 1,53 | (αβ)3 | 4PO5 | |
| β | 161 | 17215.64 | 5.43 | ||||||
| Mastigocladus laminosus (CB) | α | 161 | 17252.63 | 4.90 | 38,3/65,4 | 1,77 | (αβ)3 | 1B33 | |
| β | 161 | 17373.84 | 5.45 | ||||||
| Synechococcus elongatus (CB) | α | 161 | 17421.76 | 4.79 | 38/67,5 | 1,57 | (αβ)3 | 4F0U | |
| β | 161 | 17392.77 | 5.45 | ||||||
| Thermosynechococcus vulcanus (CB) | α | 161 | 17538.96 | 4.85 | 39,5/67,9 | 1,38 | (αβ)3 | 3DBJ, 2V8A | |
| β | 161 | 17358.89 | 5.45 | ||||||
| Agarophyton chilense (RA) | α | 161 | 17519.01 | 4.90 | 38,3/63,6 | 1,42 | (αβ)3 | 5TJF | |
| β | 161 | 17471.82 | 5.10 | ||||||
| Porphyra yezoensis (RA) | α | 161 | 17496.96 | 5.09 | 35,8/62,3 | 1,47 | (αβ)6 | 1KN1 | |
| β | 161 | 17443.89 | 5.45 |