numerical parameters |
|
initial number of agents |
N(0) |
30 000 |
experimental measurement (electronic supplementary material, S7) |
initial number of red agents |
Nr(0) |
20 911 |
assumption (electronic supplementary material, S8) |
initial number of yellow agents |
Ny(0) |
995 |
assumption (electronic supplementary material, S8) |
initial number of green agents |
Ng(0) |
8094 |
assumption (electronic supplementary material, S8) |
domain length |
L |
4000 μm |
numerical experiments (electronic supplementary material, S4.3) |
initial spheroid radius |
|
245 μm |
experimental measurement |
dispersal distance |
σ |
12 μm |
assumption (electronic supplementary material, S5) |
migration distance |
μ |
12 μm |
assumption (electronic supplementary material, S5) |
simulation time |
T |
240 h |
experimental measurement |
per capita agent rates |
maximum G1–eS transition rate |
Rr
|
0.047 h–1
|
experimental measurement (electronic supplementary material, S6) |
constant eS–S/G2/M transition rate |
Ry
|
0.50 h–1
|
experimental measurement (electronic supplementary material, S6) |
constant S/G2/M–G1 transition rate (mitosis) |
Rg
|
0.062 h–1
|
experimental measurement (electronic supplementary material, S6) |
maximum death rate |
dmax
|
2 h–1
|
assumption |
minimum death rate |
dmin
|
0.0005 h–1
|
assumption |
maximum migration rate |
mmax
|
0.12 h–1
|
assumption |
minimum migration rate |
mmin
|
0.06 h–1
|
assumption |
hill function index for arrest |
η1
|
5 |
assumption |
hill function index for migration |
η2
|
5 |
assumption |
hill function index for death |
η3
|
15 |
assumption |
nutrient parameters |
number of nodes |
I3
|
2013
|
assumption (electronic supplementary material, S4.4) |
steady-state solution interval |
t* |
1 h |
assumption (electronic supplementary material, S4.4) |
consumption-diffusion ratio |
α |
0.15 μm cell–1
|
assumption |
critical arrest concentration |
ca
|
0.4 |
assumption |
critical migration concentration |
cm
|
0.5 |
assumption |
critical death concentration |
cd
|
0.1 |
assumption |