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. 2022 Apr 6;19(189):20210903. doi: 10.1098/rsif.2021.0903

Table 1.

IBM parameter values.

parameter name symbol value source
numerical parameters
initial number of agents N(0) 30 000 experimental measurement (electronic supplementary material, S7)
initial number of red agents Nr(0) 20 911 assumption (electronic supplementary material, S8)
initial number of yellow agents Ny(0) 995 assumption (electronic supplementary material, S8)
initial number of green agents Ng(0) 8094 assumption (electronic supplementary material, S8)
domain length L 4000 μm numerical experiments (electronic supplementary material, S4.3)
initial spheroid radius ro(0) 245 μm experimental measurement
dispersal distance σ 12 μm assumption (electronic supplementary material, S5)
migration distance μ 12 μm assumption (electronic supplementary material, S5)
simulation time T 240 h experimental measurement
per capita agent rates
maximum G1–eS transition rate Rr 0.047 h–1 experimental measurement (electronic supplementary material, S6)
constant eS–S/G2/M transition rate Ry 0.50 h–1 experimental measurement (electronic supplementary material, S6)
constant S/G2/M–G1 transition rate (mitosis) Rg 0.062 h–1 experimental measurement (electronic supplementary material, S6)
maximum death rate dmax 2 h–1 assumption
minimum death rate dmin 0.0005 h–1 assumption
maximum migration rate mmax 0.12 h–1 assumption
minimum migration rate mmin 0.06 h–1 assumption
hill function index for arrest η1 5 assumption
hill function index for migration η2 5 assumption
hill function index for death η3 15 assumption
nutrient parameters
number of nodes I3 2013 assumption (electronic supplementary material, S4.4)
steady-state solution interval t* 1 h assumption (electronic supplementary material, S4.4)
consumption-diffusion ratio α 0.15 μm cell–1 assumption
critical arrest concentration ca 0.4 assumption
critical migration concentration cm 0.5 assumption
critical death concentration cd 0.1 assumption