Table 1.
Type | Stage | Protocol/Reagent used | Reference | ||
---|---|---|---|---|---|
Virus inactivation | Heat treatment | Before direct analysis, or before RNA extraction |
Lower temperature, longer duration | Temperature above 80°C, during at least 1 hour; | (Burton et al., 2021) |
Higher temperature, brief duration | Temperatures above 90°C can inactivate samples in a few minutes; | (Burton et al., 2021) | |||
Chemical methods | Transport | VTM | Primestore MTM, 4M GITC/Tx TM, COPAN eNAT; | (Welch et al., 2020; Richard-Greenblatt et al., 2021) | |
Before analysis without full RNA extraction, or in the process of full RNA extraction |
Non-anionic detergents | Triton X-100; | (Welch et al., 2020) | ||
Lysis buffer | ATL, VXL, AVL, Phanter fusion specimen lysis tubes, MagNA Pure External LB, RLT, E&O Lab LB; | (Pastorino et al., 2020b; Welch et al., 2020) | |||
Extraction reagents | Trizol, Trizol LS; | (Patterson et al., 2020) | |||
Before direct analysis, | Other | TCEP+ EDTA + Heat. | (Rabe and Cepko, 2020) |