Table 2.
No. | Sex | Age (yr) | Sillence classification | Gene | Nucleotide change | Amino acid change | ACMG criteria | Mutation type | PolyPhen-2 | SIFT | Mutation Taster | CADD score | Clinical score |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | F | 51.5 | Ia | COL1A1 | c.148C>T | p.R50* | Pathogenic | Quantitative | ND | ND | Damaging | 34 | 11 |
2 | F | 2.7 | Ia | COL1A1 | c.1984-7_1985del | Small deletion | Pathogenic | Quantitative | ND | ND | Damaging | ND | 8 |
3 | F | 5.0 | Ia | COL1A1 | c.2830-3A>G | Splice site | Likely pathogenic | Quantitative | ND | ND | Damaging | 14.41 | 6 |
4 | F | 3.5 | Ia | COL1A1 | c.3207+1G>A | Splice site | Pathogenic | Quantitative | ND | ND | Damaging | 35 | 8 |
5 | F | 0.9 | Ia | COL1A1 | c.3207+1G>A | Splice site | Pathogenic | Quantitative | ND | ND | Damaging | 35 | 7 |
6 | M | 5.8 | Ib | COL1A2 | c.595-1G>C | Splice site | Pathogenic | Quantitative | ND | ND | Damaging | 33 | 6 |
7 | F | 1.0 | Ib | COL1A1 | c.1678G>A | p.G560S | Pathogenic | Qualitative | Damaging | Damaging | Damaging | 29 | 11 |
8 | F | 2.1 | Ib | COL1A2 | c.1694G>C | p.G565A | Likely pathogenic | Qualitative | Damaging | Damaging | Damaging | 25.6 | 11 |
9 | M | 11.0 | III | COL1A2 | c.982G>A | p.G328S | Pathogenic | Qualitative | Damaging | Damaging | Damaging | 28.5 | 14 |
10 | M | 13.0 | IV | COL1A2 | c.2324G>A | p.G775E | Likely pathogenic | Qualitative | Damaging | Damaging | Damaging | 32 | 10 |
11 | M | 6.0 | IV | COL1A1 | c.635G>A | p.G212E | Pathogenic | Qualitative | Damaging | Damaging | Damaging | 26.4 | 10 |
12 | M | 36.3 | IV | COL1A2 | c.3016G>A | p.G1006S | Likely pathogenic | Qualitative | Damaging | Damaging | Damaging | 29.7 | 12 |
13 | M | 18.1 | IV | COL1A1 | c.1003G>A | p.G335S | Pathogenic | Qualitative | Damaging | Damaging | Damaging | 33 | 12 |
ACMG, The American College of Medical Genetics and Genomics; PolyPhen, Polymorphism Phenotyping; SIFT, Sorting Intolerant from Tolerant; CADD, The Combined Annotation Dependent Depletion; ND, not done.