| Antibodies |
|
|
| Monoclonal mouse anti-StrepII |
Qiagen |
cat#34850 |
| Monoclonal mouse anti-His |
Genescript |
cat#A00186 |
| Monoclonal mouse anti-LPS |
HycultBiotech |
cat#HM6011 |
| Polyclonal rabbit anti-BamD |
Pavlova et al., 2013
|
N/A |
| Polyclonal rabbit anti-EspP β-barrel (C-term peptide) |
Szabady et al., 2005
|
N/A |
| Goat anti-mouse Ig 800CW IRDye |
Licor |
cat#926-32210 |
| Goat anti-rabbit Ig 680LT IRDye |
Licor |
cat#926-680210 |
| Bacterial and virus strains |
|
|
|
E. coli B strain BL21(DE3) |
Invitrogen |
cat#C600003 |
|
E. coli K-12 strain XL1-Blue |
Agilent |
cat#200236 |
|
E. coli K-12 strain NEB5alpha |
NEB |
cat#C2987H |
| Chemicals, peptides, and recombinant proteins |
|
|
| 4,4’-dipyridyl disulfide |
Sigmaaldrich |
cat#143057-5G |
| Proteinase K |
Roche |
cat#3115852001 |
| Xiran SL30010P20 |
Orbiscope |
cat#SMALP200 |
| Deposited data |
|
|
| BAM-MBP-76EspP high-resolution structure |
This paper |
EMDB-26114, PDB: 7TTC |
| BAM-MBP-76EspP class 1 structure |
This paper |
EMDB-26105, PDB: 7TSZ |
| BAM-MBP-76EspP class 2 structure |
This paper |
EMDB-26106, PDB: 7TT0 |
| BAM-MBP-76EspP class 3 structure |
This paper |
EMDB-26108, PDB: 7TT2 |
| BAM-MBP-76EspP class 4 structure |
This paper |
EMDB-26107, PDB: 7TT1 |
| BAM-MBP-76EspP class 5 structure |
This paper |
EMDB-26109, PDB: 7TT3 |
| BAM-MBP-76EspP class 6 structure |
This paper |
EMDB-26110, PDB: 7TT4 |
| BAM-MBP-76EspP open-sheet EspP state structure |
This paper |
EMDB-26111, PDB: 7TT5 |
| BAM-MBP-76EspP intermediate-open EspP state structure |
This paper |
EMDB-26112, PDB: 7TT6 |
| BAM-MBP-76EspP barrelized EspP/ continuous open BamA state structure |
This paper |
EMDB-26113, PDB: 7TT7 |
| Oligonucleotides |
|
|
| See Table S2 in Supplemental Information
|
This paper |
N/A |
| Recombinant DNA |
|
|
| See Table S2 in Supplemental Information
|
This paper |
N/A |
| Software and algorithms |
|
|
| UCSF Chimera |
Pettersen et al., 2004
|
https://www.cgl.ucsf.edu/chimera/
|
| UCSF ChimeraX |
Pettersen et al., 2021
|
https://www.cgl.ucsf.edu/chimerax/
|
| RELION 3.1 |
Zivanov et al., 2018
|
https://relion.readthedocs.io/en/latest/Inst allation.html
|
| cryoSPARC |
Punjani et al., 2020
|
https://cryosparc.com
|
| Coot |
Emsley et al., 2010
|
https://www2.mrclmb.cam.ac.uk/personal/pemsley/coot/
|
| Isolde |
Croll, 2018
|
https://isolde.cimr.cam.ac.uk
|
| Rosetta |
Wang et al., 2016
|
https://www.rosettacommons.org/software
|
| Phenix |
Adams et al., 2010
|
https://phenixonline.org
|
| Other |
| OPM server |
Lomize et al., 2012
|
https://opm.phar.umich.edu/ppm_server
|