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. Author manuscript; available in PMC: 2023 Mar 31.
Published in final edited form as: Cell. 2022 Mar 15;185(7):1143–1156.e13. doi: 10.1016/j.cell.2022.02.016
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Monoclonal mouse anti-StrepII Qiagen cat#34850
Monoclonal mouse anti-His Genescript cat#A00186
Monoclonal mouse anti-LPS HycultBiotech cat#HM6011
Polyclonal rabbit anti-BamD Pavlova et al., 2013 N/A
Polyclonal rabbit anti-EspP β-barrel (C-term peptide) Szabady et al., 2005 N/A
Goat anti-mouse Ig 800CW IRDye Licor cat#926-32210
Goat anti-rabbit Ig 680LT IRDye Licor cat#926-680210
Bacterial and virus strains
E. coli B strain BL21(DE3) Invitrogen cat#C600003
E. coli K-12 strain XL1-Blue Agilent cat#200236
E. coli K-12 strain NEB5alpha NEB cat#C2987H
Chemicals, peptides, and recombinant proteins
4,4’-dipyridyl disulfide Sigmaaldrich cat#143057-5G
Proteinase K Roche cat#3115852001
Xiran SL30010P20 Orbiscope cat#SMALP200
Deposited data
BAM-MBP-76EspP high-resolution structure This paper EMDB-26114, PDB: 7TTC
BAM-MBP-76EspP class 1 structure This paper EMDB-26105, PDB: 7TSZ
BAM-MBP-76EspP class 2 structure This paper EMDB-26106, PDB: 7TT0
BAM-MBP-76EspP class 3 structure This paper EMDB-26108, PDB: 7TT2
BAM-MBP-76EspP class 4 structure This paper EMDB-26107, PDB: 7TT1
BAM-MBP-76EspP class 5 structure This paper EMDB-26109, PDB: 7TT3
BAM-MBP-76EspP class 6 structure This paper EMDB-26110, PDB: 7TT4
BAM-MBP-76EspP open-sheet EspP state structure This paper EMDB-26111, PDB: 7TT5
BAM-MBP-76EspP intermediate-open EspP state structure This paper EMDB-26112, PDB: 7TT6
BAM-MBP-76EspP barrelized EspP/ continuous open BamA state structure This paper EMDB-26113, PDB: 7TT7
Oligonucleotides
See Table S2 in Supplemental Information This paper N/A
Recombinant DNA
See Table S2 in Supplemental Information This paper N/A
Software and algorithms
UCSF Chimera Pettersen et al., 2004 https://www.cgl.ucsf.edu/chimera/
UCSF ChimeraX Pettersen et al., 2021 https://www.cgl.ucsf.edu/chimerax/
RELION 3.1 Zivanov et al., 2018 https://relion.readthedocs.io/en/latest/Inst allation.html
cryoSPARC Punjani et al., 2020 https://cryosparc.com
Coot Emsley et al., 2010 https://www2.mrclmb.cam.ac.uk/personal/pemsley/coot/
Isolde Croll, 2018 https://isolde.cimr.cam.ac.uk
Rosetta Wang et al., 2016 https://www.rosettacommons.org/software
Phenix Adams et al., 2010 https://phenixonline.org
Other
OPM server Lomize et al., 2012 https://opm.phar.umich.edu/ppm_server