TABLE 3.
Annotation of outlier SNPs from various genome‐scan methods and highly ranked SNPs from random forest
| Contig_position | Locus | SNP | Bayescan | Arlequin | Rf | Annotation |
|---|---|---|---|---|---|---|
| LSalAtl2s18_783602 | 625 | T:C | No | No | Yes | intergenic_region |
| LSalAtl2s41_211832 | 4,443 | C:G | No | No | Yes | intron_variant |
| LSalAtl2s60_347705 | 7,031 | T:C | No | Yes | No | intergenic_region |
| LSalAtl2s60_347724 | 7,032 | G:A | No | Yes | No | intergenic_region |
| LSalAtl2s70_134344 | 7,330 | C:T | No | No | Yes | intron_variant |
| LSalAtl2s116_626766 | 434 | C:T | No | No | Yes | intron_variant |
| LSalAtl2s140_542836 | 9,380 | G:A | No | Yes | No | intergenic_region |
| LSalAtl2s166_420680 | 6,551 | T:C | No | No | Yes | intergenic_region |
| LSalAtl2s194_195505 | 5,624 | T:G | Putative | Yes | Yes | intergenic_region |
| LSalAtl2s267_411921 | 11,550 | T:A | No | No | Yes | intergenic_region |
| LSalAtl2s301_279372 | 7,303 | C:T | No | Yes | Yes | intergenic_region |
| LSalAtl2s359_216742 | 10,150 | C:A | No | Yes | No | intergenic_region |
| LSalAtl2s359_216752 | 10,151 | A:C | No | Yes | No | intergenic_region |
| LSalAtl2s443_387864 | 9,078 | C:T | No | No | Yes | intron_variant |
| LSalAtl2s663_572884 | 4,414 | C:G | No | Yes | Yes | upstream_gene_variant: Split ends like |
| LSalAtl2s881_180761 | 15,067 | C:A | No | Yes | Yes | intergenic_region |
| LSalAtl2s976_75870 | 16,465 | C:T | No | No | Yes | intergenic_region |
| LSalAtl2s2627_5290 | 17,953 | C:G | Putative | Yes | No | intergenic_region |