Table 2.

Summary of significant MTAs detected in the two environments (E1, 2017–18 and E2, 2018–19) and BLUP values after false discovery rate (FDR) correction using CMLM

Trait	SNP	Allele	Chr	Pos. of SNP tag (bp)	R2	Effect
E1
GLWR	SNP_13927	G/A#	2B	658,485,687–658,485,737	0.12	−0.09
E2
GL	SNP_3202*	A/G	3A	593,990,302–593,990,370	0.14	−0.28
	SNP_1476	A/C	6B	19,922,669–19,922,737	0.12	−0.22
	SNP_8572	A/G	5B	4,832,008–4,832,050	0.12	−0.13
	SNP_10532	G/C	4A	603,050,386–603,050,443	0.12	−0.23
	SNP_1716	C/T	2B	41,473,091–41,473,159	0.11	−0.19
	SNP_9406	G/A	3B	36,470,465–36,470,533	0.11	0.11
	SNP_4632	T/C	7A	44,352,216–44,352,284	0.11	0.21
GWid	SNP_2896	G/A	7A	77,195,120–77,195,188	0.1	−0.08
	SNP_330	T/A	2B	615,353,108–615,353,155	0.09	−0.1
	SNP_3275	T/C	1A	555,132,587–555,132,655	0.09	−0.07
BLUP
GCSA	SNP_4563	A/C	2B	571,070,836–571,070,884	0.12	−0.61
GL	SNP_7441*	A/G	3A	731,844,353–731,844,410	0.12	0.01
	SNP_14066	T/C	2B	12,009,346–12,009,414	0.13	0.01
GP	SNP_12816	A/G	7B	647,426,653–647,426,721	0.13	−0.29
	SNP_13748	C/T	3A	715,576,111–715,576,179	0.13	0.2
	SNP_9771	G/T	7B	684,269,233–684,269,301	0.12	0.21
GWid	SNP_5401*	G/T	2A	79,343,336–79,343,404	0.1	0.05
	SNP_4648*	G/T	7A	94,143,005–94,143,073	0.1	0.12
GLWR	SNP_5518	G/A	1D	225,564,124–225,564,192	0.09	−0.05
	SNP_12288*	T/C	2B	683,768,477–683,768,545	0.08	−0.03
GFD	SNP_15086	G/A	7B	641,807,115–641,807,183	0.11	−0.22

E1; environment 1, E2; environment 2, *; Bonferroni multiple correction passed, #; desirable allele, Chr; chromosome, Pos; position