Table 3.

A list of significant MTAs that qualify FDR correction detected in each of the two the environments (E1-2017–18 and E2-2018–19) using FarmCPU

Trait	SNP	Allele	Chr	Pos. of SNP tag (bp)	Effect
E1
GCSA	SNP_2665	C/T#	7A	611,728,422–611,728,490	0.75
GP	SNP_4263	C/G	2B	215,951,648–215,951,716	− 0.65
GWid	SNP_7518	G/C	5D	368,249,809–368,249,877	− 0.09
E2
GCSA	SNP_1597	C/T	1D	67,863,683–67,863,742	− 1.12
GL	SNP_3202*	A/G	3A	593,990,302–593,990,370	− 0.28
GP	SNP_4865	T/C	5A	10,724,684–10,724,752	0.76
	SNP_9771	T/G	7B	684,269,233–684,269,301	0.38
GFD	SNP_6775	T/A	2B	436,016,073–436,016,141	− 0.42
	SNP_10672	T/C	6A	602,752,656–602,752,703	0.42
BLUP
GCSA	SNP_4563*	C/A#	2B	571,070,836–571,070,884	− 0.61
	SNP_2665	T/C	7D	531,439,752–531,439,820	0.57
GP	SNP_4865	T/C	5B	547,290,640–547,290,708	0.01
	SNP_13730	T/C	3B	70,909,819–70,909,887	0.01
GL	SNP_7441*	G/A	3B	809,510,260–809,510,317	0.2
	SNP_8141	C/T	4A	702,149,172–702,149,240	0.05
GLWR	SNP_5518	G/A	1D	225,564,124–225,564,192	0.12
GFD	SNP_15086	A/G	7B	641,807,115–641,807,183	− 0.22
	SNP_1653	G/T	1A	550,948,719–550,948,771	− 0.24
	SNP_6775	A/T	2B	436,016,073–436,016,141	0.51

E1; environment 1, E2; environment 2, *; Bonferroni multiple correction passed, #; desirable allele, Chr; chromosome and  Pos; position