Table 4.

A summary of significant MTAs for 2–4 traits that qualify FDR correction and detected in both the environments (E1-2017–18 and E2-2018–19) using mvLMM

Trait combination	SNP	Allele#	Chr	Pos. of SNP tag (bp)	Trait combination	SNP	Allele#	Chr	Pos. of SNP tag (bp)
E1
GL-GWid-GLWR-GFD	SNP_912*	C/G#	6B	674,558,317–674,558,364	GP-GWid-GLWR-GFD	SNP_8616	C/A	7A	41,428,595–41,428,650
	SNP_9744*	G/C	2B	800,127,644–800,127,712		SNP_9656	T/A	1A	351,340,404–351,340,472
	SNP_17773	G/C	3B	819,747,424–819,747,492	GCSA-GL-GLWR-GFD	SNP_8616	C/A	7A	41,428,595–41,428,650
GCSA-GWID-GLWR-GFD	SNP_8616	A/A	7A	41,428,595–41,428,650	GP-GL-GWLR-GFD	SNP_12761	T/G	6B	20,093,212–20,093,280
E2
GCSA-GP-GL	SNP_8221	T/C	1D	408,525,725–408,525,793	GCSA-GWid-GLWR-GFD	SNP_912*	C/G	6B	674,558,317–674,558,364
	SNP_3393	A/T	5A	536,221,003–536,221,071		SNP_9744*	G/C	2B	800,127,644–800,127,712
	SNP_16292	C/T	5B	697,526,371–697,526,439		SNP_7751	T/C	2A	51,261,956–51,262,014
GP-GL-GWid	SNP_8221	T/C	1D	408,525,725–408,525,793		SNP_3393	A/T	5A	536,221,003–536,221,071
	SNP_3393	T/A	5A	536,221,003–536,221,071		SNP_11003	C/A	6A	584,705,543–584,705,611
GL-GWid-GLWR	SNP_7751	T/C	2A	51,261,956–51,262,014		SNP_259	G/A	2B	703,904,164–703,904,221
	SNP_11003	A/C	6A	584,705,543–584,705,611		SNP_6171	G/C	7A	681,786,065–681,786,132
	SNP_3968	C/T	6A	583,269,004–583,269,072		SNP_3968	C/T	6A	583,269,004–583,269,072
	SNP_3393	T/A	5A	536,221,003–536,221,071		SNP_3393	A/T	5A	536,221,003–536,221,071
GWid-GLWR-GFD	SNP_3915	C/T	3A	502,497,785–502,497,853	GP-GWid-GLWR-GFD	SNP_3915	T/C	3A	502,497,785–502,497,853
	SNP_373	G/T	1A	573,920,780–573,920,835		SNP_2735	T/C	6A	69,057,764–69,057,802
	SNP_259	A/G	2B	703,904,164–703,904,221		SNP_373	T/G	1A	573,920,780–573,920,835
GCSA-GP-GL-GWid	SNP_3393	T/A	5A	536,221,003–536,221,071		SNP_3915	T/C	3A	502,497,785–502,497,853
	SNP_16292	C/T	5B	697,526,371–697,526,439		SNP_8221	C/T	1D	408,525,725–408,525,793
GP-GL-GWid-GLWR	SNP_7751	C/T	2A	51,261,956–51,262,014	GCSA-GL-GLWR-GFD	SNP_3393	A/T	5A	536,221,003–536,221,071
	SNP_11003	A/C	6A	584,705,543–584,705,611		SNP_373	T/G	1A	573,920,780–573,920,835
	SNP_3968	C/T	6A	583,269,004–583,269,072	GP-GL-GLWR-FFD	SNP_373	T/G	1A	573,920,780–573,920,835
GL-GWid-GLWR-GFD	SNP_373	T/G	1A	573,920,780–573,920,835		SNP_688	A/G	4A	692,758,028–692,758,090
	SNP_3915	T/C	3A	502,497,785–502,497,853		SNP_3915	T/C	3A	502,497,785–502,497,853

*; Bonferroni multiple correction passed, Chr; chromosome, Pos; position and # desirable allele