Table 6.
Prediction of MHC-II epitopes from MTDH by four different servers
| Server | Start position | Sequences | Rank |
|---|---|---|---|
| Rankpep | Scorea | ||
| 79 | RKKRRSPPR | 11.409 | |
| 25 | LSVGLGFLR | 10.851 | |
| 119 | RKKLSEKPK | 9.069 | |
| 343 | RSIFSGIGS | 8.897 | |
| 137 | EGEAVRTPQ | 8.408 | |
| MHCpred | Predicted IC50 value (nM)b | ||
| 374 | YIDDEWSGL | 1.11 | |
| 6 | WQDELAQQA | 1.38 | |
| 233 | EQLTTASFP | 1.82 | |
| 144 | PQSVTAKQP | 2.97 | |
| MHC2pred | Scorec | ||
| 278 | NLTVNGGGW | 1.870 | |
| 218 | DSTIPGIEN | 1.717 | |
| 516 | TSTEPSVIL | 1.497 | |
| 283 | GGGWNEKSV | 1.464 | |
| IEDB | Percentile rankd | ||
| 41 | DDLALLKNLRSEEQK | 1.80 | |
| 2 | LLLFLLGYGWAAACA | 2.40 | |
| 9 | NSQPIKTLPPATSTE | 2.80 |
aHigh score¼good binder; bLow predicted IC50 value¼good binder; chigh score = good binder; dlow percentile rank = good binder