Table 4.
Summary of unique structural variations in mutant rice lines as compared to reference genome Oryza sativa ssp. indica 93-11 and JBT 36/14.
| Mutants | Line-8 | Line-9 | Line-11 | Line-15 |
|---|---|---|---|---|
| SNP variants | ||||
| Unique SNPs compared to JBT 36/14 | 354,340 | 553,463 | 396,978 | 293,237 |
| Unique SNPs compared to JBT 36/14 and reference 93-11 | 963 | 1,037 | 960 | 907 |
| Coding region Variants | 56,681 | 90,023 | 61,970 | 46,526 |
| Homozygous variants | 186,608 | 370,392 | 226,235 | 155,792 |
| Heterozygous variants | 167,732 | 183,071 | 170,743 | 137,445 |
| Ti/Tv ratio | 2.45 | 2.33 | 2.38 | 2.30 |
| InDel variants | ||||
| Unique InDels | 32,884 | 65,571 | 41,295 | 32,394 |
| Unique InDels compared to JBT 36/14 and reference 93-11 | 100 | 162 | 115 | 102 |
| Coding region Variants | 6,531 | 12,300 | 7,540 | 6,183 |
| Homozygous variants | 24,953 | 54,979 | 32,638 | 24,983 |
| Heterozygous variants | 7,931 | 10,594 | 8,657 | 7,411 |