Table 1:
Number of ions needs to satisfy the different ion-environment conditions. In each condition-dependent simulation, raw salt concentration []* corrected bulk concentrations [] determined (using the aforesaid approach) and calculated preferential interaction coefficients,Γ.
Chelated Mg2+ | + | + | + | + | - | - |
---|---|---|---|---|---|---|
[Mg2+] =2.0 mM | + | + | - | - | - | - |
Temp ➔ | T | T* | T | T* | T | T* |
NMg2+ | 11 | 11 | 2 | 2 | 0 | 0 |
NK+ | 116 | 116 | 138 | 138 | 138 | 138 |
NCl- | 46 | 46 | 50 | 50 | 46 | 46 |
[Mg2+ ]* mM a | 2.8 | 2.86 | - | - | - | - |
[K+]* mM | 112 | 110.3 | 120.6 | 117 | 115.0 | 116.0 |
[Cl−]* mM | 95 | 94.9 | 103.1 | 103 | 95.1 | 99 |
[Mg2+] mM b | 2.2 | 2.3 | - | - | - | - |
[K+] mM | 100.5 | 99.5 | 111.1 | 109.5 | 104 | 107.2 |
[Cl−] mM | 105 | 104.1 | 111.1 | 109.5 | 104 | 107.2 |
ΓMg2+ | 9.74 | 9.69 | - | - | - | - |
ΓK+ | 58.59 | 59.16 | 74.53 | 75.58 | 78.54 | 76.88 |
ΓCl− | −13.98 | −13.47 | −13.50 | −12.42 | −13.41 | −15.12 |
Raw concentration: Raw concentrations are determined 20 Å beyond RNA (asterisk),
Corrected bulk concentrations are determined using a small potential perturbation approximation method.