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Number of overlapping SNPs at each significance threshold for the GSMR/SPU tests vs. 2SMR tests
| Threshold | Min # of SNPs (GSMR/SPU tests) | Mean # of SNPs (GSMR/SPU tests) | Max # of SNPs (GSMR/SPU tests) | Min # of SNPs (2SMR tests) | Mean # of SNPs (2SMR tests) | Max # of SNPs (2SMR tests) |
|---|---|---|---|---|---|---|
| 5×10−4 | 522 | 624 | 748 | 440 | 532 | 651 |
| 5×10−5 | 43 | 81 | 132 | 35 | 70 | 112 |
| 5×10−6 | 3 | 12 | 35 | 3 | 10 | 31 |
