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. 2022 Feb 26;41(15):2210–2224. doi: 10.1038/s41388-022-02241-w

Fig. 7. Knockdown of Ewing-specific EWS-FLI1 fusion protein by αIGF1R-mAB-protamine/siRNA/protamine nanoparticles targeting Ewing sarcoma cells.

Fig. 7

A IGF1R-targeting mABs A12 (cixutumumab) and Tepro (teprotumumab) were expressed and purified using a GMP-like method and then conjugated to protamine to enable siRNA binding and transport. IgG-protamine conjugates exhibit a decent molecular weight shift (arrows). HC heavy chain, LC light chain, -P SMCC-protamine. B Band-shift assay using αIGF1R-mABs-protamine (-P) and different ratios of siRNA (left panels). Antibody-protamine complexes without free SMCC-protamine do not bind siRNA anymore. Right panels (a–d): αIGF1R-mAB-P in presence of free SMCC-protamine can form nanoparticles with Alexa488-control-siRNA (a: A12, b: Tepro). αIGF1R-mAB-P depleted from free SMCC-protamine cannot form these nanoparticles with Alexa488-control-siRNA (c: A12, d: Tepro). C Anti-IGF1R-mAB-protamine with free SMCC-protamine shuttled Alexa488-marked control-siRNA to SK-N-MC Ewing cells (left panel: A12-mAB-P, right panel: Tepro-mAB-P). Bar represents 10 µm. D Schematic representation of the breakpoint regions in the human EWS protein, the FLI-1 protein and the resulting oncogenic fusion protein EWS-FLI1 along with the breakpoint mRNA sequence and the EWS-FLI1-specific siRNA sequence that was used for this study (see EG and Fig. 8) (BD binding domain, NLS nuclear localisation signal). EG SK-N-MC cells were treated with protamine-conjugated A12 (E) or Tepro (F) formed siRNA nanoparticles as indicated and subjected to colony formation assays. E/F–siRNA is an siRNA interfering with the mRNA of the driving Ewing sarcoma EWS-FLI1 as depicted in D. G SK-N-MC cells treated with αIGF1R (A12)-mAB-protamine/EWS-FLI1-siRNA/P nanoparticles form significantly less colonies in soft agar than cells treated with αIGF1R (A12)-mAB-protamine/contr (scr)-siRNA/P. No differences in colony formation can be observed when SK-N-MC cells were treated with αIGF1R-mAB-protamine conjugates without free SMCC-protamine not resulting in the formation of nanocarriers. Shown here are means of three independent experiments ± SD. Asterisk indicates significant differences (p < 0.05, two-sided t-test).