Table 5.
Co-expression between SLC26A9 and CFTR using the Human Lung Cell Atlas data40.
Cell Type | Number of cells | Zero-inflated negative binomial model | Spearman’s correlation | |||
---|---|---|---|---|---|---|
Effect size | S.E. | P-value | Rho | P-value | ||
Club | 895 | −0.00007 | 0.00125 | 0.9564 | 0.05173 | 0.12196 |
AT2a | 760 | 0.00035 | 0.00013 | 0.0097 | 0.13215 | 0.00026 |
Basal | 240 | −11.6529 | 94.6542 | 0.9020 | −0.02365 | 0.71544 |
AT1a | 421 | −8.41119 | 152.863 | 0.9561 | −0.01178 | 0.80962 |
AT2-sa | 201 | 0.00143 | 0.00122 | 0.2433 | 0.28686 | 0.00004 |
Differentiating Basal | 43 | −0.02385 | 0.01931 | 0.2168 | 0.07235 | 0.64478 |
AT2 and AT2-s | 961 | 0.00041 | 0.00014 | 0.0036 | 0.16567 | <0.0001 |
AT1, AT2 and AT2-s | 1382 | 0.00048 | 0.00015 | 0.0018 | 0.32261 | <0.0001 |
The effect size estimate from zero-inflated negative binomial model indicates log-ratio relations between CFTR and SLC26A9 expression. Values greater than zero correspond to positive co-expression. Spearman’s correlation estimates (rho) were calculated using log-transformed read counts per million measures for CFTR and SLC26A9. The Spearman’s correlation and the zero-inflated negative binomial model analysis were performed by R function cor.test() and the zeroinfl() function in the package pscl90, respectively. All p-values indicate two-sided statistical test results.
aAT2 Alveolar Epithelial Type 2; AT1 Alveolar Epithelial Type 1; AT2-s Signaling Alveolar Epithelial Type 2