TABLE 1.
Fragment | Primer | Nucleotide sequence (5′ to 3′)a | Position and direction |
---|---|---|---|
V149 | rpoB-ri 1 | CCCAACAGATTTAGAAGT | bp 54, sense |
RpoB-ri 1-B (BglII) | ATTA AGATCT CCCAACAGATTTAGAAGT | bp 54, sense | |
rpoB-ri-F | GATCCCTTTGATGACAGAAC | bp 387, sense | |
rpoB-ri-R | TACCATAACAGGCTCAGC | bp 916, antisense | |
RpoB-ri-R-X (XhoI) | TTTAA CTCGAG TACCATAACAGGCTCAGC | bp 916, antisense | |
V149X/Muta for | NNNAATCAACTCCACAGAAGCCb | bp 446, sense | |
V149X/Muta rev | CACCACGCGCTCCACCC | bp 445, antisense | |
Cluster | RpoB5 | AAATGATCACAAGCACCATC | bp 1530, sense |
rpoB-CL | ACCTTGCCATCCACAACC | bp 1839, antisense | |
rpoB-CLF | ATGTGCCTGATTACATCACGAC | bp 1371, sense | |
rpoB-CLR | TTGGCGCTGCATGTTAGTCC | bp 2106, antisense | |
R701 | rpoB ecF | GGTAGCCGCATCGCTCATTC | bp 2028, sense |
rpoB ecR | TGCCTACAATGGGAGCGTC | bp 2146, antisense | |
RpoB701F-B (BglII) | ATTA AGATCT CCTTTCCACTTTCACAAGAG | bp 1764, sense | |
RpoB701F-X (XhoI) | TTTAA CTCGAG TTCCCTAACGCTAACTCG | bp 2423, antisense | |
R710H-For | ACCAAGCGGTGCCGTTATTc | bp 2102, sense | |
R701H-Rev | GCTGCATGTTAGTCCCCATTA | bp 2101, antisense |
Italics indicate introduced restriction sites; underlining indicates introduced mutations.
Introduction of the completely randomized codon from bp 446 to 448, GTC to NNN.
Introduction of the mutation CGC to CAC into codon from bp 2101 to 2103.