TABLE 2.
Enrichment of gene ontology (GO) and echinoderm-specific gene sets and pathways (see Methods) in the set of differentially-expressed genes between the two pH levels used in this study
| Embryo | Larva | Juvenile | |
|---|---|---|---|
| Genes | *SPU_007451 | SPU_018406 | SPU_010805 |
|
| |||
| *SPU_009476 | SPU_002088 | SPU_021344 | |
|
| |||
| *SPU_008985 | SPU_013821 | SPU_000353 | |
|
| |||
| *SPU_002148 | SPU_013823 | SPU_025378 | |
|
| |||
| *SPU_016500 | SPU_026146 | ||
|
| |||
| SPU_014496 | SPU_013237 | ||
|
| |||
| SPU_002088 | SPU_008175 | ||
|
| |||
| SPU_015763 | |||
|
| |||
| Categorical enrichment | Nucleotide catabolic process (<0.003) | Nucleotide catabolic process (<0.006) | Microtubule-based movement (<2.5e–6) |
|
| |||
| Regulation of transcription, DNA-templated (<0.006) | Regulation of transcription, DNA-templated (<0.022) | Microtubule cytoskeleton organization (<0.002) | |
| *PMC effector genes (<0.034) | Biomineralization genes (<0.081) | Cilium movement (<0.006) | |
| Biomineralization genes (<0.034) | Regulation of transcription, DNA-templated (<0.009) | ||
| Wnt signaling pathway (<0.009) | |||
Note: PMC effector genes (Rafiq et al., 2014) are marked with an asterisk.