Table 5.
DESeq2 output and contrast.
Contrast | ASVsa | baseMeanb | log2FC | lfcSEc | P-value | Genus |
---|---|---|---|---|---|---|
CH + R vs. control | ASV537 | 6.84 | 5.69 | 1.34 | 0.00 | Rhodopseudomonas |
ASV688 | 3.94 | 5.23 | 1.48 | 0.00 | Prosthecomicrobium | |
ASV149 | 90.0 | 2.13 | 0.54 | 0.00 | Colidextribacter | |
ASV8 | 1515 | 1.04 | 0.34 | 0.00 | Lactobacillus | |
ASV191 | 251 | − 2.30 | 0.63 | 0.00 | Ruminococcus | |
ASV25 | 2136 | − 2.65 | 0.76 | 0.00 | Treponema | |
ASV124 | 102 | − 3.46 | 0.66 | 0.00 | Helicobacter | |
ASV446 | 14.7 | − 4.46 | 1.51 | 0.00 | Asteroleplasma | |
CH + M vs. control | ASV4 | 1631 | 6.87 | 1.44 | 0.00 | Escherichia/Shigella |
ASV23 | 2322 | 2.04 | 0.66 | 0.00 | Alloprevotella | |
ASV108 | 330 | 1.86 | 0.63 | 0.00 | Sutterella | |
ASV149 | 90.0 | 1.75 | 0.53 | 0.00 | Colidextribacter | |
ASV199 | 51.6 | − 1.26 | 0.42 | 0.00 | Solobacterium | |
ASV151 | 60.8 | − 2.91 | 0.63 | 0.00 | Catenibacterium | |
ASV99 | 108 | − 3.61 | 1.26 | 0.00 | Streptococcus | |
ASV446 | 14.7 | − 4.48 | 1.48 | 0.00 | Asteroleplasma | |
ASV239 | 68.2 | − 4.67 | 1.36 | 0.00 | Mitsuokella | |
CH vs. control | ASV8 | 1515 | 1.17 | 0.34 | 0.00 | Lactobacillus |
ASV108 | 330 | 2.56 | 0.64 | 0.00 | Sutterella | |
ASV149 | 90.0 | 2.06 | 0.54 | 0.00 | Colidextribacter | |
ASV537 | 6.84 | 6.50 | 1.33 | 0.00 | Rhodopseudomonas | |
ASV688 | 3.94 | 5.17 | 1.48 | 0.00 | Prosthecomicrobium | |
CH vs. CH + R | ASV124 | 102 | 3.72 | 0.68 | 0.00 | Helicobacter |
CH + M vs. CH + R | ASV4 | 1631 | − 7.67 | 1.48 | 0.00 | Escherichia/Shigella |
All (CH, CH + R, CH + M) vs. control | ASV8 | 1515 | 1.04 | 0.34 | 0.00 | Lactobacillus |
ASV25 | 2136 | − 2.65 | 0.76 | 0.00 | Treponema | |
ASV124 | 102 | − 3.46 | 0.66 | 0.00 | Helicobacter | |
ASV149 | 90.0 | 2.13 | 0.54 | 0.00 | Colidextribacter | |
ASV191 | 251 | − 2.30 | 0.63 | 0.00 | Ruminococcus | |
ASV446 | 14.7 | − 4.46 | 1.51 | 0.00 | Asteroleplasma | |
ASV537 | 6.84 | 5.69 | 1.34 | 0.00 | Rhodopseudomonas | |
ASV688 | 3.94 | 5.23 | 1.48 | 0.00 | Prosthecomicrobium |
Control = control diet; CH = Chlorella vulgaris diet; CH + R = C. vulgaris diet supplemented with Rovabio® Excel AP; CH + M = C. vulgaris diet supplemented with a pre-selected enzymatic mixture.
aASVs: abundant amplicon sequence variants.
bbaseMean: mean of normalized counts of all samples.
clfcSE: standard error estimated for the log2 fold change.