TABLE 3.
Genome metrics of representative Xanthomonas hortorum strains
| Organism | Submission year | Strain | GenBank assembly accession | Assembly level | Contigs/scaffolds | Size (Mb) | GC (%) | N50 (bp) | CDS a | Plasmids (bp) |
|---|---|---|---|---|---|---|---|---|---|---|
| X. hortorum | 2017 | B07‐007 | GCA_002285515.1 | Complete | 2 | 5.25 | 63.6 | 5,175,249 | 4241 | pB07007 (75,655 bp) |
| X. hortorum | 2019 | VT 106 | GCA_008728175.1 | Complete | 2 | 5.15 | 63.7 | 5,101,806 | 4135 | pVT106 (44,015 bp) |
| X. hortorum | 2020 | FPH2013‐1 | GCA_011305375.1 | Scaffold | 70 | 5.22 | 63.7 | 190,176 | 4187 | – |
| X. hortorum pv. carotae | 2013 | M081 | GCA_000505565.1 | Chromosome | 1 | 5.05 | 63.7 | 5,052,399 | 8446 | – |
| X. hortorum pv. carotae | 2020 | MAFF 301101 | GCA_015726835.1 | Contig | 423 | 5.10 | 63.7 | 20,618 | 3972 | – |
| X. hortorum pv. cynarae | 2018 | CFBP 4188PT | GCA_002939985.1 | Scaffold | 102 | 5.06 | 63.7 | 145,505 | 4060 | – |
| X. hortorum pv. cynarae | 2020 | CFBP 2044 | GCA_903978235.1 | Complete | 2 | 5.12 | 63.7 | 5,079,002 | 8640 | CFBP2044_p40 (40,232 bp) |
| X. hortorum pv. gardneri | 2015 | SM234‐10 | GCA_001009295.1 | Scaffold | 179 | 5.33 | 63.5 | 49,361 | 4337 | – |
| X. hortorum pv. gardneri | 2015 | SM605‐11 | GCA_001009325.1 | Scaffold | 158 | 5.34 | 63.5 | 61,942 | 4327 | – |
| X. hortorum pv. gardneri | 2015 | SM775‐12 | GCA_001009625.1 | Scaffold | 176 | 5.25 | 63.6 | 59,240 | 4244 | – |
| X. hortorum pv. gardneri | 2016 | JS749‐3 | GCA_001908755.1 | Complete | 3 | 5.42 | 63.5 | 5,158,913 | 4373 | pJS749‐3.1 (211,336 bp), pJS749‐3.2 (45,952 bp) |
| X. hortorum pv. gardneri | 2020 | CFBP 8163PT | GCA_012922265.1 | Contig | 121 | 5.15 | 63.7 | 125,969 | 4151 | – |
| X. hortorum pv. hederae | 2018 | CFBP 4925T | GCA_002940005.1 | Scaffold | 313 | 5.32 | 63.8 | 42,684 | 4299 | – |
| X. hortorum pv. pelargonii | 2020 | CFBP 2533PT | GCA_012922215.1 | Contig | 94 | 5.21 | 63.8 | 134,256 | 4176 | – |
| X. hortorum pv. taraxaci | 2020 | NCPPB 940PT | GCA_903978185.1 | Complete | 2 | 5.03 | 63.8 | 4,999,567 | 8628 | NCPPB940_p30 (29,567 bp) |
| X. hortorum pv. vitians | 2020 | LM 16735 | GCA_012922125.1 | Contig | 138 | 5.19 | 63.7 | 118,265 | 4192 | – |
| X. hortorum pv. vitians | 2020 | LMG 938neoPT | GCA_012922135.1 | Contig | 119 | 5.03 | 63.8 | 141,718 | 4036 | – |
| X. hortorum pv. vitians | 2020 | LM 16388 | GCA_012922175.1 | Contig | 121 | 5.07 | 63.7 | 115,523 | 4063 | – |
| X. hortorum pv. vitians | 2020 | CFBP 3978 | GCA_012922195.1 | Contig | 131 | 5.13 | 63.7 | 141,718 | 4137 | – |
| X. hortorum pv. vitians | 2020 | CFBP 499 | GCA_012922335.1 | Contig | 132 | 5.17 | 63.7 | 118,955 | 4161 | – |
| X. hortorum pv. vitians | 2020 | LM 16734 | GCA_014338485.1 | Complete | 2 | 5.27 | 63.7 | 5,213,310 | 4223 | pLM16734 (57,250 bp) |
| X. hortorum pv. vitians | 2020 | CFBP 498 | GCA_903978195.1 | Complete | 4 | 5.68 | 63.2 | 5,365,193 | 4654 | CFBP498_p224 (224,704 bp), CFBP498_p47 (47,063 bp), CFBP498_p41 (41,583 bp) |
| X. hortorum pv. vitians | 2016 | ICMP 7383 | GCA_001908775.1 | Complete | 4 | 5.63 | 63.3 | 5,313,102 | 4511 | pICMP7383.1 (203,385 bp), pICMP7383.2 (61,840 bp), pICMP7383.3 (47,122 bp) |
a
The number of CDS is a direct output from NCBI and three numbers appear to overestimate the actual number.